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(-) Description

Title :  STRUCTURE OF AN APC2-UBCH10 COMPLEX REVEALS DISTINCTIVE CULLIN-RING LIGASE MECHANISM FOR ANAPHASE-PROMOTING COMPLEX/CYCLOSOME
 
Authors :  N. G. Brown, S. E. Cho, B. A. Schulman
Date :  02 Mar 15  (Deposition) - 08 Apr 15  (Release) - 08 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,U
Keywords :  Ligase-Cell Cycle Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. G. Brown, S. E. Cho, B. A. Schulman
Crystal Structure Of E2 Complex
Proc. Natl. Acad. Sci. Usa 2015
PubMed: search

(-) Compounds

Molecule 1 - UBIQUITIN-CONJUGATING ENZYME E2 C
    Chains: U
    EC Number: 6.3.2.19
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 27-179
    Gene: UBE2C, UBCH10
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: UBCH10,UBIQUITIN CARRIER PROTEIN C,UBIQUITIN-PROTEIN LIGASE C
 
Molecule 2 - ANAPHASE-PROMOTING COMPLEX SUBUNIT 2
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 735-822
    Gene: ANAPC2, APC2, KIAA1406
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: APC2,CYCLOSOME SUBUNIT 2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AU

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4YII)

(-) Sites  (0, 0)

(no "Site" information available for 4YII)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YII)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr U:89 -Pro U:90

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YII)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YII)

(-) Exons   (0, 0)

(no "Exon" information available for 4YII)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:72
                                                                                                        
               SCOP domains ------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.........hhhhhhhhhhhhhhh...eee..eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 4yii A 747 KEEELLLFWTYIQAMLTNLESLSLDRIYNMLRMFVVTGPALAEIDLQELQGYLQKKVRDQQLVYSAGVYRLP 818
                                   756       766       776       786       796       806       816  


Chain U from PDB  Type:PROTEIN  Length:145
                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh...eeeee......eeeeeee..........eeeeeee..........eeee................hhhhh.......hhhhhhhhhhhhhhh.......hhhhhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yii U  29 GPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQ 173
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YII)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YII)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YII)

(-) Gene Ontology  (36, 52)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Tyr U:89 - Pro U:90   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ANC2_HUMAN | Q9UJX6: 4ui9 5a31 5g04 5g05 5khr 5khu 5l9t 5l9u 5lcw
        UBE2C_HUMAN | O00762: 1i7k 5a31 5khr 5l9u

(-) Related Entries Specified in the PDB File

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