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(-) Description

Title :  CRYSTAL STRUCTURE OF PTP DELTA FN1-FN2
 
Authors :  A. Yamagata, S. Fukai
Date :  25 Feb 15  (Deposition) - 06 May 15  (Release) - 06 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.97
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Synapse Organizer (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Yamagata, T. Yoshida, Y. Sato, S. Goto-Ito, T. Uemura, A. Maeda, T. Shiroshima, S. Iwasawa-Okamoto, H. Mori, M. Mishina, S. Fukai
Mechanisms Of Splicing-Dependent Trans-Synaptic Adhesion By Ptp Delta-Il1Rapl1/Il-1Racp For Synaptic Differentiation.
Nat Commun V. 6 6926 2015
PubMed-ID: 25908590  |  Reference-DOI: 10.1038/NCOMMS7926

(-) Compounds

Molecule 1 - RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE DELTA
    Chains: A, B
    EC Number: 3.1.3.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: ROSETTA (DE3)
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 321-511
    Gene: PTPRD
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: R-PTP-DELTA

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4YFE)

(-) Sites  (0, 0)

(no "Site" information available for 4YFE)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YFE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4YFE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YFE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YFE)

(-) Exons   (0, 0)

(no "Exon" information available for 4YFE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:193
                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee....eeee..........eeeeeeee.......eeeeee...eeee.......eeeeeeeee....eeee...eeee..........eeeeeee.....eeeeee..........eeeeeee.....hhhhheeeeee...eeee.......eeeeeeeee...........eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yfe A 328 ALPKPPGTPVVTESTATSITLTWDSGNPEPVSYYIIQHKPKNSEEPYKEIDGIATTRYSVAGLSPYSDYEFRVVAVNNIGRGPASEPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITLE 520
                                   337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517   


Chain B from PDB  Type:PROTEIN  Length:193
                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee....eeee..........eeeeeeee.......eeeeee...eeee.......eeeeeeeee....eeee...eeee..........eeeeeee.....eeeeee..........eeeeeee.....hhhhheeeeee...eeee.......eeeeeeeee....eeee...eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yfe B 328 ALPKPPGTPVVTESTATSITLTWDSGNPEPVSYYIIQHKPKNSEEPYKEIDGIATTRYSVAGLSPYSDYEFRVVAVNNIGRGPASEPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITLE 520
                                   337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YFE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YFE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YFE)

(-) Gene Ontology  (18, 18)

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  4yfe
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  PTPRD_MOUSE | Q64487
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PTPRD_MOUSE | Q64487: 4y61 4yfc 4yfd 4yfg 4yh7

(-) Related Entries Specified in the PDB File

4yfc 4yfd 4yfg