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(-) Description

Title :  THE 1.43 ANGSTROM CRYSTAL STRUCTURE OF BACTERIORHODOPSIN CRYSTALLIZED FROM BICELLES
 
Authors :  H. Saiki, S. Sugiyama, K. Kakinouchi, S. Kawatake, S. Hanashima, N. Mat M. Murata
Date :  17 Feb 15  (Deposition) - 17 Feb 16  (Release) - 17 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.43
Chains :  Asym./Biol. Unit :  A
Keywords :  Bacteriorhodopsin, Complex, Membrane Protein, Cell Membrane; Multi- Pass Membrane Protein, Lipid Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. Saiki, S. Sugiyama, K. Kakinouchi, S. Kawatake, S. Hanashima, N. Matsumori, M. Murata
The 1. 43 Angstrom Crystal Structure Of Bacteriorhodopsin Crystallized From Bicelles
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BACTERIORHODOPSIN
    ChainsA
    Organism ScientificHALOBACTERIUM SALINARUM (STRAIN ATCC 29341 / DSM 671 / R1)
    Organism Taxid478009
    StrainATCC 29341 / DSM 671 / R1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 17)

Asymmetric/Biological Unit (7, 17)
No.NameCountTypeFull Name
1D104Ligand/IonDECANE
2D128Ligand/IonDODECANE
3DD91Ligand/IonNONANE
4HP61Ligand/IonHEPTANE
5PO41Ligand/IonPHOSPHATE ION
6R161Ligand/IonHEXADECANE
7RET1Ligand/IonRETINAL

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETRP A:86 , THR A:90 , MET A:118 , TRP A:138 , SER A:141 , THR A:142 , TRP A:182 , TYR A:185 , TRP A:189 , ASP A:212 , LYS A:216binding site for residue RET A 301
02AC2SOFTWAREPHE A:71 , GLY A:72 , LYS A:129 , VAL A:130 , TYR A:131 , HOH A:402binding site for residue PO4 A 302
03AC3SOFTWARED12 A:312binding site for residue D12 A 304
04AC4SOFTWARETYR A:150 , D12 A:312binding site for residue D12 A 305
05AC5SOFTWAREASN A:176 , VAL A:177 , VAL A:180binding site for residue D12 A 306
06AC6SOFTWAREPHE A:88 , D12 A:311binding site for residue D10 A 307
07AC7SOFTWAREVAL A:136 , R16 A:309binding site for residue D10 A 308
08AC8SOFTWAREPHE A:135 , VAL A:136 , TYR A:150 , D10 A:308binding site for residue R16 A 309
09AC9SOFTWARED12 A:316binding site for residue D10 A 310
10AD1SOFTWARETHR A:55 , MET A:56 , D10 A:307binding site for residue D12 A 311
11AD2SOFTWARED12 A:304 , D12 A:305binding site for residue D12 A 312
12AD3SOFTWARETRP A:137binding site for residue DD9 A 313
13AD4SOFTWARED10 A:317 , HOH A:443binding site for residue D12 A 314
14AD5SOFTWARED10 A:310binding site for residue D12 A 316
15AD6SOFTWAREILE A:203 , LEU A:207 , D12 A:314binding site for residue D10 A 317

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Y9H)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4Y9H)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Y9H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Y9H)

(-) Exons   (0, 0)

(no "Exon" information available for 4Y9H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:226
                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y9h A   6 GRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFG 231
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225      

   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Y9H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Y9H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Y9H)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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        B0R5N9_HALS3 | B0R5N95b35

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