4Y0V - JenaLib

Title :   STRUCTURE OF AN ADP RIBOSYLATION FACTOR FROM ENTAMOEBA HISTOLYTICA HM-1:IMSS BOUND TO MG-GDP

Authors :   Seattle Structural Genomics Center For Infectious Disease (S

Date :   06 Feb 15 (Deposition) - 04 Mar 15 (Release) - 20 May 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym./Biol. Unit : A,B

Keywords :   Signaling Protein, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ssgcid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. A. Serbzhinskiy, M. C. Clifton, B. Sankaran, B. L. Staker, T. E. Edwards, P. J. Myler
Structure Of An Adp-Ribosylation Factor, Arf1, From Entamoeba Histolytica Bound To Mg(2+)-Gdp.
Acta Crystallogr. , Sect. F V. 71 594 2015
PubMed-ID: 25945714 | Reference-DOI: 10.1107/S2053230X15004677

Compounds

Molecule 1 - ADP-RIBOSYLATION FACTOR 1
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	EHI_073470, EHI_137720
	Organism Scientific	:	ENTAMOEBA HISTOLYTICA
	Organism Taxid	:	5759
	Synonym	:	ADP-RIBOSYLATION FACTOR,PUTATIVE,SMALL GTPASE ARFA1

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 4)

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ALA A:23 , ALA A:24 , GLY A:25 , LYS A:26 , THR A:27 , SER A:28 , ASN A:122 , LYS A:123 , ASP A:125 , CYS A:155 , ALA A:156 , MG A:202 , HOH A:349 , HOH A:362 , HOH A:382 , HOH A:384 , HOH A:406 , HOH A:442 , HOH A:445 , GLY B:46 , ASN B:48	binding site for residue GDP A 201
2	AC2	SOFTWARE	THR A:27 , GDP A:201 , HOH A:349 , HOH A:383 , HOH A:384 , HOH A:406	binding site for residue MG A 202
3	AC3	SOFTWARE	ILE A:45 , GLY A:46 , ASN A:48 , ALA B:23 , ALA B:24 , GLY B:25 , LYS B:26 , THR B:27 , SER B:28 , ASN B:122 , LYS B:123 , ASP B:125 , LEU B:126 , CYS B:155 , ALA B:156 , THR B:157 , MG B:202 , HOH B:361 , HOH B:387 , HOH B:399 , HOH B:415 , HOH B:443 , HOH B:454	binding site for residue GDP B 201
4	AC4	SOFTWARE	THR B:27 , GDP B:201 , HOH B:361 , HOH B:399 , HOH B:415 , HOH B:429	binding site for residue MG B 202

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:165
                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh....eeeeeee....hhhhhhhhhh...eeeeeee..eeeeeeee..eeeeeee...hhhhhhh.eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhh..eeeeeee........hhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y0v A   3 SWLSKLLGKKEMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLYEGLDWLADNL 173
                                    12        22        32        42        52        62   ||   78        88        98       108       118       128       138       148       158       168     
                                                                                          66|                                                                                                    
                                                                                           73

Chain B from PDB  Type:PROTEIN  Length:161
                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh....eeeeeee....hhhhhhhhhh...eeeeeee..eeeeeeee..eeeeeee.......eeeeeeeee.....hhhhhhhhhhhhhhhhhhh..eeeeeee........hhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y0v B   3 SWLSKLLGKKEMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLYEGLDWLADNL 173
                                    12        22        32        42        52        62   ||   82        92       102       112       122       132       142       152       162       172 
                                                                                          66|                                                                                                
                                                                                           77

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0 ; only for superseded entry 3RD1: 1,2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (4, 4)

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