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(-) Description

Title :  THE CRYSTAL STRUCTURE OF HAZARA VIRUS NUCLEOPROTEIN
 
Authors :  Y. Guo, W. Wang, X. Liu, X. Wang, J. Wang, T. Huo, B. Liu
Date :  04 Feb 15  (Deposition) - 02 Sep 15  (Release) - 18 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Nucleoprotein, Hazara Virus, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Wang, X. Liu, X. Wang, H. Dong, C. Ma, J. Wang, B. Liu, Y. Mao, Y. Wang, T. Li, C. Yang, Y. Guo
Structural And Functional Diversity Of Nairovirus-Encoded Nucleoproteins.
J. Virol. V. 89 11740 2015
PubMed-ID: 26246561  |  Reference-DOI: 10.1128/JVI.01680-15

(-) Compounds

Molecule 1 - NUCLEOPROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: HAZARA VIRUS
    Organism Taxid: 11596
    Synonym: NUCLEOCAPSID PROTEIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4XZE)

(-) Sites  (0, 0)

(no "Site" information available for 4XZE)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XZE)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Asn B:369 -Asp B:370
2Ile B:484 -Ile B:485
3Asn C:369 -Asp C:370
4Asn D:369 -Asp D:370

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XZE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XZE)

(-) Exons   (0, 0)

(no "Exon" information available for 4XZE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:472
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhh.................hhhhhhhhhhh.hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.......................hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhh.........hhhhh........hhhhhhhhhh.....hhhhhhhh..hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh..............hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xze A   0 SMENKIVASTKEEFNTWYKQFAEKHKLNNKYTESASFCAEIPQLDTYKYKMELASTDNERDAIYSSALIEATRFCAPIMECAWASCTGTVKRGLEWFDKNKDSDTVKVWDANYQKLRTETPPAEALLAYQKAALNWRKDVGFSIGEYTSILKKAVAAEYKVPGTVINNIKEMLSDMIRRRNRIIGREHLDWCREFASGKFLNAFNPPWGEINKAGKSGYPLLATGLAKLVELEGKDVMDKAKASIAQLEGWVKENKDQVDQDKAEDLLKGVRESYKTALALAKQSNAFRAQGAQIDTVFSSYYWLWKAGVTPVTFPSVSQFLFELGKNPKGQKKMQKALINTPLKWGKRLIELFADNDFTENRIYMHPCVLTSGRMSELGISFGAVPVTSPDDAAQGSGHTKAVLNYKTKTEVGNPCACIISSLFEIQKAGYDIESMDIVASEHLLHQSLVGKRSPFQNAYLIKGNATNINI 484
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179   ||  202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482  
                                                                                                                                                                                                                 183|                                                                                                                                                                                                                                                                                               
                                                                                                                                                                                                                  197                                                                                                                                                                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:473
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhh.................hhhhhhhhhhh.hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhh...............hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..hhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..hhhhhhhhhhhh..hhhhhhhhh........hhhhh........hhhhhhhhhh.....hhhhhhhh..hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.............hhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xze B   0 SMENKIVASTKEEFNTWYKQFAEKHKLNNKYTESASFCAEIPQLDTYKYKMELASTDNERDAIYSSALIEATRFCAPIMECAWASCTGTVKRGLEWFDKNKDSDTVKVWDANYQKLRTETPPAEALLAYQKAALNWRKDVGFSIGEYTSILKKAVAAEYKVPGTVINNIKEMLSDMIRRRNRIINREHLDWCREFASGKFLNAFNPPWGEINKAGKSGYPLLATGLAKLVELEGKDVMDKAKASIAQLEGWVKENKDQVDQDKAEDLLKGVRESYKTALALAKQSNAFRAQGAQIDTVFSSYYWLWKAGVTPVTFPSVSQFLFELGKNPKGQKKMQKALINTPLKWGKRLIELFADNDFTENRIYMHPCVLTSGRMSELGISFGAVPVTSPDDAAQGSGHTKAVLNYKTKTEVGNPCACIISSLFEIQKAGYDIESMDIVASEHLLHQSLVGKRSPFQNAYLIKGNATNINII 485
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179    || 202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482   
                                                                                                                                                                                                                  184|                                                                                                                                                                                                                                                                                               
                                                                                                                                                                                                                   198                                                                                                                                                                                                                                                                                               


Chain C from PDB  Type:PROTEIN  Length:474
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhh..................hhhhhhhhhhh.hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh....hhhhh...............hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..hhhhhhhhhhhh..hhhhhhhhh........hhhhh.....hhhhhhhhhhhhh.....hhhhhhhh..hhhhhhhh.......hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh..............hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xze C   0 SMENKIVASTKEEFNTWYKQFAEKHKLNNKYTESASFCAEIPQLDTYKYKMELASTDNERDAIYSSALIEATRFCAPIMECAWASCTGTVKRGLEWFDKNKDSDTVKVWDANYQKLRTETPPAEALLAYQKAALNWRKDVGFSIGEYTSILKKAVAAEYKVPGTVINNIKEMLSDMIRRRNRIINVGREHLDWCREFASGKFLNAFNPPWGEINKAGKSGYPLLATGLAKLVELEGKDVMDKAKASIAQLEGWVKENKDQVDQDKAEDLLKGVRESYKTALALAKQSNAFRAQGAQIDTVFSSYYWLWKAGVTPVTFPSVSQFLFELGKNPKGQKKMQKALINTPLKWGKRLIELFADNDFTENRIYMHPCVLTSGRMSELGISFGAVPVTSPDDAAQGSGHTKAVLNYKTKTEVGNPCACIISSLFEIQKAGYDIESMDIVASEHLLHQSLVGKRSPFQNAYLIKGNATNINI 484
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179    || 200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480    
                                                                                                                                                                                                                  184|                                                                                                                                                                                                                                                                                                
                                                                                                                                                                                                                   196                                                                                                                                                                                                                                                                                                


Chain D from PDB  Type:PROTEIN  Length:466
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhh.................hhhhhhhhhhh.hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..hhhhhhhhhhhh..hhhhhhhhhh.......hhhhh........hhhhhhhhhh.....hhhhhhhh..hhhhhhhh....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xze D   0 SMENKIVASTKEEFNTWYKQFAEKHKLNNKYTESASFCAEIPQLDTYKYKMELASTDNERDAIYSSALIEATRFCAPIMECAWASCTGTVKRGLEWFDKNKDSDTVKVWDANYQKLRTETPPAEALLAYQKAALNWRKDVGFSIGEYTSILKKAVAAEYKVPGTVINNIKEMLSDMIRRRNRIIREHLDWCREFASGKFLNAFNPPWGEINKAGKSGYPLLATGLAKLVELEGKDVMDKAKASIAQLEGWVKENKDQVDQDKAEDLLKGVRESYKTALALAKQSNAFRAQGAQIDTVFSSYYWLWKAGVTPVTFPSVSQFLFELGKNPKGQKKMQKALINTPLKWGKRLIELFADNDFTENRIYMHPCVLTSGRMSELGISFGAVPVTSPDDAAQGSGHTKAVLNYKTVGNPCACIISSLFEIQKAGYDIESMDIVASEHLLHQSLVGKRSPFQNAYLIKGNATNI 482
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179   ||  203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       426       436       446       456       466       476      
                                                                                                                                                                                                                 183|                                                                                                                                                                                                                            421|                                                         
                                                                                                                                                                                                                  198                                                                                                                                                                                                                             425
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XZE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XZE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XZE)

(-) Gene Ontology  (4, 4)

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  Cis Peptide Bonds
    Asn B:369 - Asp B:370   [ RasMol ]  
    Asn C:369 - Asp C:370   [ RasMol ]  
    Asn D:369 - Asp D:370   [ RasMol ]  
    Ile B:484 - Ile B:485   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        M4PWE6_9VIRU | M4PWE6: 5a97

(-) Related Entries Specified in the PDB File

4xz8 4xza 4xzc