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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN SEPIAPTERIN REDUCTASE IN COMPLEX WITH AN N-ACETYLSEROTININ ANALOGUE
 
Authors :  K. Johnsson, R. Hovius, K. I. Gorszka, F. Pojer
Date :  29 Jan 15  (Deposition) - 01 Jul 15  (Release) - 25 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Oxidoreductase, Inhibitor, Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Latremoliere, A. Latini, N. Andrews, S. J. Cronin, M. Fujita, K. Gorska, R. Hovius, C. Romero, S. Chuaiphichai, M. Painter, G. Miracca, O. Babaniyi, A. P. Remor, K. Duong, P. Riva, L. B. Barrett, N. Ferreiros, A. Naylor, J. M. Penninger, I. Tegeder, J. Zhong, J. Blagg, K. M. Channon, K. Johnsson, M. Costigan, C. J. Woolf
Reduction Of Neuropathic And Inflammatory Pain Through Inhibition Of The Tetrahydrobiopterin Pathway.
Neuron V. 86 1393 2015
PubMed-ID: 26087165  |  Reference-DOI: 10.1016/J.NEURON.2015.05.033

(-) Compounds

Molecule 1 - SEPIAPTERIN REDUCTASE
    Chains: A, B, C, D
    EC Number: 1.1.1.153
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET9A
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 15-275
    Gene: SPR
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: THE N-TERMIUS" MHHHHHHENLYFQG" WAS ADDED FOR PURIFICATION M15 IS ORIGINAL START CODON OF THE PROTEIN RESIDUES 1-17 "MHHHHHHENLYFQGMEG" AND 275 "K" ARE NOT RESOLVED IN THE STRUCTURE
    Synonym: SPR

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 17)

Asymmetric Unit (3, 17)
No.NameCountTypeFull Name
143O4Ligand/IonN-[2-(5-HYDROXY-2-METHYL-1H-INDOL-3-YL)ETHYL]-2-METHOXYACETAMIDE
2NDP4Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3SO49Ligand/IonSULFATE ION
Biological Unit 1 (3, 9)
No.NameCountTypeFull Name
143O2Ligand/IonN-[2-(5-HYDROXY-2-METHYL-1H-INDOL-3-YL)ETHYL]-2-METHOXYACETAMIDE
2NDP2Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3SO45Ligand/IonSULFATE ION
Biological Unit 2 (3, 8)
No.NameCountTypeFull Name
143O2Ligand/IonN-[2-(5-HYDROXY-2-METHYL-1H-INDOL-3-YL)ETHYL]-2-METHOXYACETAMIDE
2NDP2Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3SO44Ligand/IonSULFATE ION

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:11 , SER A:13 , ARG A:14 , GLY A:15 , PHE A:16 , ARG A:39 , ASN A:40 , ALA A:65 , ASP A:66 , LEU A:67 , ASN A:97 , LEU A:123 , ILE A:152 , SER A:153 , TYR A:167 , LYS A:171 , PRO A:195 , GLY A:196 , PRO A:197 , LEU A:198 , THR A:200 , MET A:202 , GLN A:203 , 43O A:802 , HOH A:922 , HOH A:924 , HOH A:927 , HOH A:950 , HOH A:951 , HOH A:963 , HOH A:964 , HOH A:967binding site for residue NDP A 801
02AC2SOFTWARESER A:154 , CYS A:156 , TRP A:164 , TYR A:167 , ALA A:194 , GLY A:196 , PRO A:197 , MET A:202 , ASP A:254 , NDP A:801 , HOH A:952binding site for residue 43O A 802
03AC3SOFTWAREARG A:14 , GLY A:15 , HOH A:951 , LYS B:87binding site for residue SO4 A 803
04AC4SOFTWAREARG A:39 , HOH A:922binding site for residue SO4 A 804
05AC5SOFTWARELYS A:87 , GLY A:88binding site for residue SO4 A 805
06AC6SOFTWAREARG B:59 , VAL B:60binding site for residue SO4 A 806
07AC7SOFTWAREGLY B:11 , SER B:13 , ARG B:14 , GLY B:15 , PHE B:16 , ALA B:38 , ARG B:39 , ASN B:40 , ALA B:65 , ASP B:66 , LEU B:67 , ASN B:97 , GLY B:99 , LEU B:123 , ILE B:152 , SER B:153 , TYR B:167 , LYS B:171 , PRO B:195 , GLY B:196 , PRO B:197 , LEU B:198 , THR B:200 , MET B:202 , GLN B:203 , 43O B:302 , HOH B:403 , HOH B:411 , HOH B:424 , HOH B:441 , HOH B:467 , HOH B:468binding site for residue NDP B 301
08AC8SOFTWARESER B:154 , CYS B:156 , TRP B:164 , TYR B:167 , ALA B:194 , GLY B:196 , PRO B:197 , MET B:202 , ASP B:254 , NDP B:301binding site for residue 43O B 302
09AC9SOFTWARELYS B:87 , GLY B:88binding site for residue SO4 B 303
10AD1SOFTWAREARG B:189 , PHE B:247 , LYS B:248 , SER B:249binding site for residue SO4 B 304
11AD2SOFTWAREARG B:39 , HOH B:424binding site for residue SO4 B 305
12AD3SOFTWAREGLY C:11 , SER C:13 , ARG C:14 , GLY C:15 , PHE C:16 , ALA C:38 , ARG C:39 , ASN C:40 , ALA C:65 , ASP C:66 , LEU C:67 , ASN C:97 , ALA C:98 , LEU C:123 , ILE C:152 , SER C:153 , SER C:154 , TYR C:167 , LYS C:171 , PRO C:195 , GLY C:196 , PRO C:197 , LEU C:198 , THR C:200 , MET C:202 , GLN C:203 , 43O C:302 , HOH C:409 , HOH C:437 , HOH C:440 , HOH C:446 , HOH C:448 , HOH C:455 , HOH C:469 , HOH C:470binding site for residue NDP C 301
13AD4SOFTWARESER C:154 , LEU C:155 , CYS C:156 , TRP C:164 , TYR C:167 , ALA C:194 , GLY C:196 , PRO C:197 , GLN C:203 , ASP C:254 , NDP C:301binding site for residue 43O C 302
14AD5SOFTWAREARG C:39 , HOH C:434 , HOH C:446binding site for residue SO4 C 303
15AD6SOFTWAREGLY D:11 , SER D:13 , ARG D:14 , GLY D:15 , PHE D:16 , ALA D:38 , ARG D:39 , ASN D:40 , ALA D:65 , ASP D:66 , LEU D:67 , ASN D:97 , ALA D:98 , LEU D:123 , ILE D:152 , SER D:153 , SER D:154 , TYR D:167 , LYS D:171 , PRO D:195 , GLY D:196 , PRO D:197 , LEU D:198 , THR D:200 , ASP D:201 , MET D:202 , GLN D:203 , 43O D:302 , HOH D:412 , HOH D:426 , HOH D:427 , HOH D:437 , HOH D:438binding site for residue NDP D 301
16AD7SOFTWARESER D:154 , LEU D:155 , CYS D:156 , TRP D:164 , TYR D:167 , ALA D:194 , GLY D:196 , PRO D:197 , ASP D:254 , NDP D:301binding site for residue 43O D 302
17AD8SOFTWAREARG D:39binding site for residue SO4 D 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XWY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XWY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XWY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XWY)

(-) Exons   (0, 0)

(no "Exon" information available for 4XWY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:257
                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee....hhhhhhhhhhhhh......eeeeee.hhhhhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhhhhhhh.......eeeeee..........hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhh..eeeeeee.....hhhhhhhhhhh.hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.....eeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xwy A   1 GLGRAVCLLTGASRGFGRTLAPLLASLLSPGSVLVLSARNDEALRQLEAELGAERSGLRVVRVPADLGAEAGLQQLLGALRELPRPKGLQRLLLINNAGSLGDVSKGFVDLSDSTQVNNYWALNLTSMLCLTSSVLKAFPDSPGLNRTVVNISSLCALQPFKGWALYCAGKAARDMLFQVLALEEPNVRVLNYAPGPLDTDMQQLARETSVDPDMRKGLQELKAKGKLVDCKVSAQKLLSLLEKDEFKSGAHVDFYD 257
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       


Chain B from PDB  Type:PROTEIN  Length:257
                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee....hhhhhhhhhhhhh......eeeeee.hhhhhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhhhhhh........eeeeee..........hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhh..eeeeeee.....hhhhhhhhhhh.hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh......eee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xwy B   1 GLGRAVCLLTGASRGFGRTLAPLLASLLSPGSVLVLSARNDEALRQLEAELGAERSGLRVVRVPADLGAEAGLQQLLGALRELPRPKGLQRLLLINNAGSLGDVSKGFVDLSDSTQVNNYWALNLTSMLCLTSSVLKAFPDSPGLNRTVVNISSLCALQPFKGWALYCAGKAARDMLFQVLALEEPNVRVLNYAPGPLDTDMQQLARETSVDPDMRKGLQELKAKGKLVDCKVSAQKLLSLLEKDEFKSGAHVDFYD 257
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       


Chain C from PDB  Type:PROTEIN  Length:257
                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee....hhhhhhhhhhhhh......eeeeee.hhhhhhhhhhh.hhhhhh.eeeeee....hhhhhhhhhhhhhh........eeeeee..........hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhh.hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh......eee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xwy C   1 GLGRAVCLLTGASRGFGRTLAPLLASLLSPGSVLVLSARNDEALRQLEAELGAERSGLRVVRVPADLGAEAGLQQLLGALRELPRPKGLQRLLLINNAGSLGDVSKGFVDLSDSTQVNNYWALNLTSMLCLTSSVLKAFPDSPGLNRTVVNISSLCALQPFKGWALYCAGKAARDMLFQVLALEEPNVRVLNYAPGPLDTDMQQLARETSVDPDMRKGLQELKAKGKLVDCKVSAQKLLSLLEKDEFKSGAHVDFYD 257
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       


Chain D from PDB  Type:PROTEIN  Length:257
                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee...hhhhhhhhhhhhh......eeeeee.hhhhhhhhhhhhh......eeeeee....hhhhhhhhhhhhhh........eeeeee..........hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhh..eeeeeee.....hhhhhhhhhhh.hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh......eee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xwy D   1 GLGRAVCLLTGASRGFGRTLAPLLASLLSPGSVLVLSARNDEALRQLEAELGAERSGLRVVRVPADLGAEAGLQQLLGALRELPRPKGLQRLLLINNAGSLGDVSKGFVDLSDSTQVNNYWALNLTSMLCLTSSVLKAFPDSPGLNRTVVNISSLCALQPFKGWALYCAGKAARDMLFQVLALEEPNVRVLNYAPGPLDTDMQQLARETSVDPDMRKGLQELKAKGKLVDCKVSAQKLLSLLEKDEFKSGAHVDFYD 257
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XWY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XWY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XWY)

(-) Gene Ontology  (12, 12)

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  4xwy
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SPRE_HUMAN | P35270: 1z6z 4hwk 4j7u 4j7x 4z3k

(-) Related Entries Specified in the PDB File

4hwk SAME PROTEIN COMPLEXED WITH NADP AND SULFAPYRIDINE
4j7u SAME PROTEIN COMPLEXED WITH NADP AND SULFATHIAZOLE
4j7x SAME PROTEIN COMPLEXED WITH NADP AND SULFAZALAZINE