4XVZ - JenaLib

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Title :   MYCF MYCINAMICIN III 3'-O-METHYLTRANSFERASE IN COMPLEX WITH MG

Authors :   D. L. Akey, J. L. Smith

Date :   28 Jan 15 (Deposition) - 04 Mar 15 (Release) - 27 May 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.49

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Macrolide, Methyltransferase, Antibiotic, Natural Product, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. M. Bernard, D. L. Akey, A. Tripathi, S. R. Park, J. R. Konwerski, Y. Anzai, S. Li, F. Kato, D. H. Sherman, J. L. Smith
Structural Basis Of Substrate Specificity And Regiochemistr In The Mycf/Tylf Family Of Sugar O-Methyltransferases.
Acs Chem. Biol. V. 10 1340 2015
PubMed-ID: 25692963 | Reference-DOI: 10.1021/CB5009348

Molecule 1 - MYCINAMICIN III 3''-O-METHYLTRANSFERASE
	Chains	:	A, B, C, D
	EC Number	:	2.1.1.237
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7-MYCF
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Gene	:	MYCF
	Organism Scientific	:	MICROMONOSPORA GRISEORUBIDA
	Organism Taxid	:	28040
	Synonym	:	MYCINAMICIN BIOSYNTHESIS PROTEIN F

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 28)

No.	Name	Count	Type	Full Name
1	CL	4	Ligand/Ion	CHLORIDE ION
2	MG	4	Ligand/Ion	MAGNESIUM ION
3	MSE	20	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 10)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	MSE	10	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 10)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	MSE	10	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	VAL A:86 , ASP A:113	binding site for residue CL A 301
2	AC2	SOFTWARE	ASP A:189 , ASP A:216 , ASP A:217 , HOH A:453 , HOH A:454 , HOH A:455	binding site for residue MG A 302
3	AC3	SOFTWARE	VAL B:86 , ASP B:113	binding site for residue CL B 301
4	AC4	SOFTWARE	ASP B:189 , ASP B:216 , ASP B:217 , HOH B:407 , HOH B:408 , HOH B:409	binding site for residue MG B 302
5	AC5	SOFTWARE	VAL C:86 , ASP C:113	binding site for residue CL C 301
6	AC6	SOFTWARE	ASP C:189 , ASP C:216 , ASP C:217 , HOH C:451 , HOH C:452 , HOH C:453	binding site for residue MG C 302
7	AC7	SOFTWARE	VAL D:86 , ASP D:113	binding site for residue CL D 301
8	AC8	SOFTWARE	ASP D:189 , ASP D:216 , ASP D:217 , HOH D:416 , HOH D:417 , HOH D:418	binding site for residue MG D 302

(no "SS Bond" information available for 4XVZ)

(no "Cis Peptide Bond" information available for 4XVZ)

(no "SAP(SNP)/Variant" information available for 4XVZ)

(no "PROSITE Motif" information available for 4XVZ)

(no "Exon" information available for 4XVZ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:200
                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhh......eeeee...hhhhhhhhhhhh......eeeee.hhhhhh.......eeeeee...hhhhhhhhhhhhh..eeeeeeeee....hhhhhhhhhhhhhhh......ee.....eeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xvz A   2 SPSTGVELYLDLLKRTVSNFIYQVAHTmIGmKRLNNLQHCVESALRDGVPGDVLETGVWRGGACIFARGILKAYDVRDRTVWVADSFTSLATVQRNFSRYGLLDDQVRFLPGWFKDTmPTAPFERLAVLRmDGDSYGATmDVLTHAYPRLSPGGFAIIDDYCIPACREAVHEYRDRHGISDEIVEIDRQGVYWRRSACNI 257
                                    11        21  ||   |58|       68        78        88        98       108      |147       157       167       177       187|      197       207       217       227       237       247       257
                                                 24|   |  |                                                     115|                           175-MSE      188-MSE  197-MSE                                                        
                                                  52   |  |                                                      145                                                                                                                
                                                      56-MSE                                                                                                                                                                        
                                                         59-MSE

Chain B from PDB  Type:PROTEIN  Length:197
                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhh......eeeee...hhhhhhhhhhhh......eeeee.hhhhhh.......eeeeee...hhhhhhhhhhhhh..eeeeeeeee....hhhhhhhhhhhhhhh......ee.....eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xvz B   1 ASPSTGVELYLDLLKRTVSNFIYQVAHTmIGmKRLNNLQHCVESALRDGVPGDVLETGVWRGGACIFARGILKAYDVRDRTVWVADSFTSLATVQRNFSRYGLLDDQVRFLPGWFKDTmPTAPFERLAVLRmDGDSYGATmDVLTHAYPRLSPGGFAIIDDYCIPACREAVHEYRDRHGISDEIVEIDRQGVYWRRS 253
                                    10        20   ||   57 |      67        77        87        97       107       146       156       166       176       186 |     196|      206       216       226       236       246       
                                                  24|   |  |                                                     115|                           175-MSE      188-MSE  197-MSE                                                    
                                                   52   |  |                                                      145                                                                                                            
                                                       56-MSE                                                                                                                                                                    
                                                          59-MSE

Chain C from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhh......eeeee.hhhhhh.......eeeeee...hhhhhhhhhhhhh..eeeeeeeee....hhhhhhhhhhhhhhh......ee.....eeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xvz C   0 NASPSTGVELYLDLLKRTVSNFIYQVAHTmIGmKRLNNLQHCVESALRDGVPGDVLETGVWRGGACIFARGILKAYDVRDRTVWVADSFQTSLATVQRNFSRYGLLDDQVRFLPGWFKDTmPTAPFERLAVLRmDGDSYGATmDVLTHAYPRLSPGGFAIIDDYCIPACREAVHEYRDRHGISDEIVEIDRQGVYWRRSACNI 257
                                     9        19    ||  56  |     66        76        86        96       106       116|      154       164       174|      184   |   194  |    204       214       224       234       244       254   
                                                   24|   |  |                                                      116|                           175-MSE      188-MSE  197-MSE                                                        
                                                    52   |  |                                                       145                                                                                                                
                                                        56-MSE                                                                                                                                                                         
                                                           59-MSE

Chain D from PDB  Type:PROTEIN  Length:199
                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhh......eeeee...hhhhhhhhhhhh......eeeee.hhhhhh.......eeeeee...hhhhhhhhhhhhh..eeeeeeeee....hhhhhhhhhhhhhhh......ee.....eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xvz D   2 SPSTGVELYLDLLKRTVSNFIYQDAVAHTmIGmKRLNNLQHCVESALRDGVPGDVLETGVWRGGACIFARGILKAYDVRDRTVWVADSFTSLATVQRNFSRYGLLDDQVRFLPGWFKDTmPTAPFERLAVLRmDGDSYGATmDVLTHAYPRLSPGGFAIIDDYCIPACREAVHEYRDRHGISDEIVEIDRQGVYWRRSA 254
                                    11        21    ||  56  |     66        76        86        96       106       145       155       165       175       185  |    195 |     205       215       225       235       245         
                                                   26|   |  |                                                     115|                           175-MSE      188-MSE  197-MSE                                                     
                                                    52   |  |                                                      145                                                                                                             
                                                        56-MSE                                                                                                                                                                     
                                                           59-MSE

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4XVZ)

(no "CATH Domain" information available for 4XVZ)

(no "Pfam Domain" information available for 4XVZ)

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Description

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Ligands, Modified Residues, Ions (3, 28)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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