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(-) Description

Title :  CRYSTAL STRUCTURE OF THE SMALL TERMINASE FROM THERMOPHILIC PHAGE G20C
 
Authors :  J. Loredo-Varela, H. T. Jenkins, M. Chechik, S. J. Greive, A. A. Antson
Date :  27 Jan 15  (Deposition) - 10 Feb 16  (Release) - 10 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (3x)
Biol. Unit 2:  D,E,F  (3x)
Keywords :  Small Terminase, Dna-Recognition, Thermophilic Phage G20C, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. A. Antson, J. Loredo-Varela, H. T. Jenkins, M. Chechik, S. J. Greive
Crystal Structure Of The Small Terminase From Thermophilic Phage G20C
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SMALL TERMINASE
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS PHAGE G20C
    Organism Taxid: 1406341

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (3x): ABC   
Biological Unit 2 (3x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 32)

Asymmetric Unit (1, 32)
No.NameCountTypeFull Name
1MSE32Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 48)
No.NameCountTypeFull Name
1MSE48Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 48)
No.NameCountTypeFull Name
1MSE48Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4XVN)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XVN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XVN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XVN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XVN)

(-) Exons   (0, 0)

(no "Exon" information available for 4XVN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xvn A   1 mSVSFRDRVLKLYLLGFDPSEIAQTLSLDVKRKVTEEEVLHVLAEARELLSALPSLEDIRAEVGQALERARIFQKDLLAIYQNmLRNYNAmmEGLTEHPDGTPVIGVRPADIAAmADRImKIDQERITAL 130
                            |       10        20        30        40        50        60        70        80   |    90||     100       110    |  120       130
                            |                                                                                 84-MSE 91-MSE                 115-MSE|          
                            1-MSE                                                                                     92-MSE                     120-MSE      


Chain B from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xvn B   6 RDRVLKLYLLGFDPSEIAQTLSEEEVLHVLAEARELLSALPSLEDIRAEVGQALERARIFQKDLLAIYQNmLRNYNAmmEGLTEHPDGTPVIGVRPADIAAmADRImKIDQERITALLNSLKV 136
                                    15        25 ||     43        53        63        73        83|      |93       103       113 |    |123       133   
                                                27|                                              84-MSE 91-MSE                 115-MSE|                
                                                 36                                                      92-MSE                     120-MSE            


Chain C from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xvn C   2 SVSFRDRVLKLYLLGFDPSEIAQTLSLDVKRKVTEEEVLHVLAEARELLSALPSLEDIRAEVGQALERARIFQKDLLAIYQNmLRNYNAmmEGLTEHPDGTPVIGVRPADIAAmADRImKIDQERITAL 130
                                    11        21        31        41        51        61        71        81  |     91|      101       111   |   121         
                                                                                                             84-MSE 91-MSE                 115-MSE|          
                                                                                                                     92-MSE                     120-MSE      


Chain D from PDB  Type:PROTEIN  Length:139
                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh..hhhhhhhhhhhh....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xvn D   2 SVSFRDRVLKLYLLGFDPSEIAQTLSLDKRKVTEEEVLHVLAEARELLSALPSLEDIRAEVGQALERARIFQKDLLAIYQNmLRNYNAmmEGLTEHPDGTPVIGVRPADIAAmADRImKIDQERITALLNSLKVLGHVG 141
                                    11        21       |32        42        52        62        72        82 |      92       102       112  |    122       132         
                                                      29|                                                   84-MSE 91-MSE                 115-MSE|                     
                                                       31                                                           92-MSE                     120-MSE                 


Chain E from PDB  Type:PROTEIN  Length:137
                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh..hhhhhhhhhhh.....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xvn E   4 SFRDRVLKLYLLGFDPSEIAQTLSLDKRKVTEEEVLHVLAEARELLSALPSLEDIRAEVGQALERARIFQKDLLAIYQNmLRNYNAmmEGEHPDGTPVIGVRPADIAAmADRImKIDQERITALLNSLKVLGHVGST 143
                                    13        23     || 34        44        54        64        74        84      ||94|      106       116   |   126       136       
                                                    29|                                                   84-MSE 91-MSE               115-MSE|                       
                                                     31                                                           92-MSE                   120-MSE                   
                                                                                                                    94|                                              
                                                                                                                     97                                              


Chain F from PDB  Type:PROTEIN  Length:137
                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh..hhhhhhhhhh.....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xvn F   1 mSVSFRDRVLKLYLLGFDPSEIAQTLSLKRKVTEEEVLHVLAEARELLSALPSLEDIRAEVGQALERARIFQKDLLAIYQNmLRNYNAmmEGTEHDGTPVIGVRPADIAAmADRImKIDQERITALLNSLKVLGHVG 141
                            |       10        20       |32        42        52        62        72        82 |      92 || || 104       114|    | 124       134       
                            1-MSE                     28|                                                   84-MSE 91-MSE ||            115-MSE|                     
                                                       31                                                           92-MSE||                 120-MSE                 
                                                                                                                      94| ||                                         
                                                                                                                       96 ||                                         
                                                                                                                         98|                                         
                                                                                                                         100
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XVN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XVN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XVN)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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