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(-) Description

Title :  CRYSTAL STRUCTURE OF CALS8 FROM MICROMONOSPORA ECHINOSPORA COCRYSTALLIZED WITH NAD AND TDP-GLUCOSE
 
Authors :  K. Michalska, L. Bigelow, M. Endres, G. Babnigg, C. A. Bingman, R. M. Yen S. Singh, M. K. Kharel, J. S. Thorson, G. N. Phillips Jr. , A. Joachimia Center For Structural Genomics (Mcsg), Enzyme Discovery For Product Biosynthesis (Natpro)
Date :  20 Jan 15  (Deposition) - 11 Feb 15  (Release) - 19 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Calicheamicin, Oxidoreductase, Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Enzyme Discovery For Natural Product Biosynthesis, Natpro (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Michalska, L. Bigelow, M. Endres, G. Babnigg, C. A. Bingman, R. M. Yennamalli, S. Singh, M. K. Kharel, J. S. Thorson, G. N. Phillips Jr. , A. Joachimiak
Crystal Structure Of Cals8 From Micromonospora Echinospora
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CALS8
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG68
    Expression System Strain: BL21 (DE3) PGROW7-K
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CALS8
    Mutation: YES
    Organism Scientific: MICROMONOSPORA ECHINOSPORA
    Organism Taxid: 1877

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric/Biological Unit (4, 4)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2NA1Ligand/IonSODIUM ION
3NAD1Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
4TMP1Ligand/IonTHYMIDINE-5'-PHOSPHATE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:19 , GLY A:21 , TYR A:22 , VAL A:23 , ASP A:42 , SER A:43 , TYR A:82 , THR A:94 , VAL A:95 , THR A:97 , GLN A:109 , ALA A:112 , ALA A:113 , SER A:131 , THR A:132 , GLU A:164 , LYS A:218 , HOH A:722 , HOH A:726 , HOH A:758 , HOH A:759binding site for residue NAD A 501
2AC2SOFTWAREGLY A:243 , HOH A:609 , HOH A:627 , HOH A:639 , HOH A:651binding site for residue NA A 502
3AC3SOFTWAREVAL A:229 , LEU A:266 , LEU A:267 , GLY A:273 , LEU A:277 , PHE A:339 , LYS A:340 , ARG A:430 , HOH A:654 , HOH A:693 , HOH A:736 , LYS B:258binding site for residue TMP A 503
4AC4SOFTWAREARG B:198 , GLY B:202binding site for residue GOL B 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XR9)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Glu A:422 -Pro A:423
2Glu B:422 -Pro B:423

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XR9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XR9)

(-) Exons   (0, 0)

(no "Exon" information available for 4XR9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:456
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ................eeeee..hhhhhhhhhhhhhh..eeeee..hhhhhhhhhhh.......hhhhhhhhhhhhh.eeee..hhhhhhh.eeee.............hhhhhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh.......eeee........hhhhhhh...eeeee.hhhhhhhhhhhhhhhhh..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..ee..ee...........hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeee.............hhhhhhhhhhhh...eeeee....hhhhhhhhhh.....hhhhhhh...eeee...hhhhhh.hhhhhhhhh....eeee.....hhhhhhhhhhh..eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xr9 A  -2 SNAMPFLPDPGEPSPLKVVIAGAGYVGTCLAVTLAGRGAEVVAVDSDPGTVADLRAGRCRLPEPGLAGAVRDLAATGRLTASTSYDPVGAADVVIVTVGTPTDAGHEMVTDQLVAACEQIAPRLRAGQLVILKSTVSPGTTRTLVAPLLESGGLVHERDFGLAFCPERLAEGVALAQVRTLPVVVGGCGPRSAAAAERFWRSALGVDVRQVPSAESAEVVKLATNWWIDANVAIANELARYCAVLGVDVLDVIGAANTLPKGSSMVNLLLPGVGVGGSCLTKDPWMAWRDGRDRGVSLRTVETARAVNDDMPRHTAAVIADELVKLGRDRNDTTIAVLGAAFKNDTGDVRNTPVRGVVAALRDSGFRVRIFDPLADPAEIVARFGTAPAASLDEAVSGAGCLAFLAGHRQFHELDFGALAERVDEPCLVFDGRMHLPPARIRELHRFGFAYRGIGR 453
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447      


Chain B from PDB  Type:PROTEIN  Length:453
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeee..hhhhhhhhhhhhhh..eeeee..hhhhhhhhhh........hhhhhhhhhhhh..eeee..hhhhhhh.eeee.............hhhhhhhhhhhh.......eeee......hhhhhhhhhhhhhhh.......eeee........hhhhhhh...eeeee.hhhhhhhhhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..ee..ee..............hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeee.............hhhhhhhhhhhhhh.eeeee....hhhhhhhhhh.....hhhhhhh...eeee...hhhhhh.hhhhhhh......eeee.....hhhhhhhhhhh..eeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xr9 B  -1 NAMPFLPDPGEPSPLKVVIAGAGYVGTCLAVTLAGRGAEVVAVDSDPGTVADLRAGRCRLPEPGLAGAVRDLAATGRLTASTSYDPVGAADVVIVTVGTPTDAGHEMVTDQLVAACEQIAPRLRAGQLVILKSTVSPGTTRTLVAPLLESGGLVHERDFGLAFCPERLAEGVALAQVRTLPVVVGGCGPRSAAAAERFWRSALGVDVRQVPSAESAEVVKLATNWWIDANVAIANELARYCAVLGVDVLDVIGAANTLPKGSSMVNLLLPGVGVGCLTKDPWMAWRDGRDRGVSLRTVETARAVNDDMPRHTAAVIADELVKLGRDRNDTTIAVLGAAFKNDTGDVRNTPVRGVVAALRDSGFRVRIFDPLADPAEIVARFGTAPAASLDEAVSGAGCLAFLAGHRQFHELDFGALAERVDEPCLVFDGRMHLPPARIRELHRFGFAYRGIGR 453
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268    || 280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450   
                                                                                                                                                                                                                                                                                                            273|                                                                                                                                                                                 
                                                                                                                                                                                                                                                                                                             276
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XR9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XR9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XR9)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8KNF6_MICEC | Q8KNF6: 4xrr

(-) Related Entries Specified in the PDB File

4xrr LIGAND-FREE RELATED ID: MCSG-APC109793 RELATED DB: TARGETTRACK RELATED ID: NATPRO-GO.119366 RELATED DB: TARGETTRACK