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(-) Description

Title :  CRYSTAL STRUCTURE OF 5'-CTTATPPPZZZATAAG
 
Authors :  M. M. Georgiadis, I. Singh
Date :  15 Jan 15  (Deposition) - 27 May 15  (Release) - 11 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.99
Chains :  Asym./Biol. Unit :  A,B
Keywords :  A-Form Dna, Non-Natural Nucleobase Pair, Synthetic Biology, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. M. Georgiadis, I. Singh, W. F. Kellett, S. Hoshika, S. A. Benner, N. G. Richards
Structural Basis For A Six Nucleotide Genetic Alphabet.
J. Am. Chem. Soc. V. 137 6947 2015
PubMed-ID: 25961938  |  Reference-DOI: 10.1021/JACS.5B03482

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*TP*(BRU)P*AP*TP*(1WA)P*(1WA)P*(1WA)P*(1W5) P*(1W5)P*(1W5)P*AP*TP*AP*AP*G)-3')
    Chains: A, B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 14)

Asymmetric/Biological Unit (3, 14)
No.NameCountTypeFull Name
11W56Mod. Nucleotide(1R)-1-(6-AMINO-2-HYDROXY-5-NITROPYRIDIN-3-YL)-1,4-ANHYDRO-2-DEOXY-5-O-PHOSPHONO-D-ERYTHRO-PENTITOL
21WA6Mod. Nucleotide2-AMINO-8-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-4-HYDROXY-1H-IMIDAZO[1,2-A][1,3,5]TRIAZINE-5,8-DIIUM
3BRU2Mod. Nucleotide5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 4XNO)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XNO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XNO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XNO)

(-) Exons   (0, 0)

(no "Exon" information available for 4XNO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA  Length:16
                                               
                  4xno A  1 CTuATxxxxxxATAAG 16
                              |  |||10|     
                              |  ||||||     
                              3-BRU||||     
                                 6-1WA|     
                                  7-1WA     
                                   8-1WA    
                                    9-1W5   
                                    10-1W5  
                                     11-1W5 


Chain B from PDB  Type:DNA  Length:16
                                               
                  4xno B  1 CTuATxxxxxxATAAG 16
                              |  |||10|     
                              3-BRU||||     
                                 6-1WA|     
                                  7-1WA     
                                   8-1WA    
                                    9-1W5   
                                    10-1W5  
                                     11-1W5
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XNO)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

4xo0 4xpc 4xpe