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(-) Description

Title :  CRYSTAL STRUCTURE OF OXIDIZED FORM OF THIOLASE FROM CLOSTRIDIUM ACETOBUTYLICUM
 
Authors :  S. Kim, S. C. Ha, J. W. Ahn, E. J. Kim, J. H. Lim, K. J. Kim
Date :  13 Jan 15  (Deposition) - 07 Oct 15  (Release) - 07 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.77
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Biol. Unit 2:  A,B  (1x)
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Kim, Y. S. Jang, S. C. Ha, J. W. Ahn, E. J. Kim, J. Hong Lim, C. Cho, Y. Shin Ryu, S. Kuk Lee, S. Y. Lee, K. J. Kim
Redox-Switch Regulatory Mechanism Of Thiolase From Clostridium Acetobutylicum
Nat Commun V. 6 8410 2015
PubMed-ID: 26391388  |  Reference-DOI: 10.1038/NCOMMS9410

(-) Compounds

Molecule 1 - ACETYL-COA ACETYLTRANSFERASE
    Chains: A, B
    EC Number: 2.3.1.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30A
    Expression System Strain: B834
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: THLA, THL, CA_C2873
    Organism Scientific: CLOSTRIDIUM ACETOBUTYLICUM (STRAIN ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
    Organism Taxid: 272562
    Strain: ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787
    Synonym: ACETOACETYL-COA THIOLASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB
Biological Unit 2 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2GOL2Ligand/IonGLYCEROL
3PEG8Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (3, 24)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2GOL4Ligand/IonGLYCEROL
3PEG16Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 2 (3, 12)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2GOL2Ligand/IonGLYCEROL
3PEG8Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:96 , GLY A:279 , SER A:280 , THR A:385 , ALA A:386 , ILE A:387 , HOH A:746binding site for residue ACT A 501
02AC2SOFTWARELYS A:265 , GLU A:266 , GLY A:268 , LYS A:270 , LYS A:302binding site for residue PEG A 502
03AC3SOFTWARETRP A:130 , ARG A:133 , HOH A:679 , HOH A:696 , LYS B:22binding site for residue PEG A 503
04AC4SOFTWAREASP A:28 , THR A:32 , LYS A:35 , HOH A:720binding site for residue PEG A 504
05AC5SOFTWARELEU A:324 , ALA A:327 , PHE A:332 , MET A:334 , HOH A:753binding site for residue PEG A 505
06AC6SOFTWARELEU A:148 , SER A:247 , GLY A:248 , ALA A:318 , HIS A:348 , HOH A:651 , HOH A:817binding site for residue GOL A 506
07AC7SOFTWARESER B:96 , GLY B:279 , SER B:280 , THR B:385 , ALA B:386 , ILE B:387 , HOH B:709binding site for residue ACT B 501
08AC8SOFTWARETRP B:130 , HOH B:657 , HOH B:738binding site for residue PEG B 502
09AC9SOFTWARELYS A:138 , ALA B:137 , LYS B:138 , HOH B:623binding site for residue PEG B 503
10AD1SOFTWAREASP B:28 , THR B:32 , LYS B:35 , HOH B:688binding site for residue PEG B 504
11AD2SOFTWARETYR A:17 , ARG B:133binding site for residue PEG B 505
12AD3SOFTWARELEU B:148 , SER B:247 , ALA B:318 , HIS B:348 , HOH B:652 , HOH B:813binding site for residue GOL B 506

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:88 -A:378
2B:88 -B:378

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XL2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XL2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XL2)

(-) Exons   (0, 0)

(no "Exon" information available for 4XL2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:384
                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeee...ee........hhhhhhhhhhhhhhhhhh.hhhhh.eeeee.........hhhhhhhhhh.......eeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee.....eee..............eehhhhhhhee....eehhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.........eeee....eeee..........hhhhhhh...................eeeeeeeeeeehhhhhhh.....eeeeee.....hhhhhhhhhhh..hhhhh.eeee...hhhhhhhhhhhhh.hhhhh....hhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeeeee.......eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xl2 A   1 MKEVVIASAVRTAIGSYGKSLKDVPAVDLGATAIKEAVKKAGIKPEDVNEVILGNVLQAGLGQNPARQASFKAGLPVEIPAMTINKVCGSGLRTVSLAAQIIKAGDADVIIAGGMENMSRAPYLANNARWGYRMGNAKFVDEMITDGLWDAFNDYHMGITAENIAERWNISREEQDEFALASQKKAEEAIKSGQFKDEIVPVVIKGRKGETVVDTDEHPRFGSTIEGLAKLKPAFKKDGTVTAGNASGLNDCAAVLVIMSAEKAKELGVKPLAKIVSYGSAGPFYATKAAIEKAGWTVDELDLIESNEAFAAQSLAVAKDLKFDMNKVNVNGGAIALGHPIGASGARILVTLVHAMQKRDAKKGLATLCIGGGQGTAILLEKCL 393
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280||     299       309       319       329       339       349       359       369       379       389    
                                                                                                                                                                                                                                                                                                                  281|                                                                                                      
                                                                                                                                                                                                                                                                                                                   291                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:384
                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeee...ee........hhhhhhhhhhhhhhhhhh.hhhhh.eeeee.........hhhhhhhhhh.......eeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee.hhh.eee..............eehhhhhhhee....eehhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.........eeee....eeee..........hhhhhhh...................eeeeeeeeeeehhhhhhh.....eeeeee.....hhhhhhhhhhh........eeee...hhhhhhhhhhhhh.hhhhh....hhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeeeee.......eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xl2 B   1 MKEVVIASAVRTAIGSYGKSLKDVPAVDLGATAIKEAVKKAGIKPEDVNEVILGNVLQAGLGQNPARQASFKAGLPVEIPAMTINKVCGSGLRTVSLAAQIIKAGDADVIIAGGMENMSRAPYLANNARWGYRMGNAKFVDEMITDGLWDAFNDYHMGITAENIAERWNISREEQDEFALASQKKAEEAIKSGQFKDEIVPVVIKGRKGETVVDTDEHPRFGSTIEGLAKLKPAFKKDGTVTAGNASGLNDCAAVLVIMSAEKAKELGVKPLAKIVSYGSAGPFYATKAAIEKAGWTVDELDLIESNEAFAAQSLAVAKDLKFDMNKVNVNGGAIALGHPIGASGARILVTLVHAMQKRDAKKGLATLCIGGGQGTAILLEKCL 393
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280||     299       309       319       329       339       349       359       369       379       389    
                                                                                                                                                                                                                                                                                                                  281|                                                                                                      
                                                                                                                                                                                                                                                                                                                   291
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XL2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XL2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XL2)

(-) Gene Ontology  (7, 7)

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4xl3 4xl4