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(-) Description

Title :  STRUCTURE OF MUTANT (E165H) OF THE HSDR SUBUNIT OF THE ECOR124I RESTRICTION ENZYME IN COMPLEX WITH ATP
 
Authors :  T. Baikova, A. Stsiapanava, M. Moche, O. Degtjarik, I. Kuta-Smatanova R. Ettrich
Date :  09 Jan 15  (Deposition) - 20 Jan 16  (Release) - 20 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Restriction Enzyme, Atp, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Baikova, R. Ettrich
Structure Of Mutant (E165H) Of The Hsdr Subunit Of The Ecor124I Restriction Enzyme In Complex With Atp
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HSDR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: GOLD
    Fragment: UNP RESIDUES 1-1038
    Gene: HSDR
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1ATP2Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2MG2Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:314 , ATP A:1102 , HOH A:1228 , HOH A:1277binding site for residue MG A 1101
2AC2SOFTWARELYS A:220 , LEU A:270 , VAL A:271 , MET A:272 , ARG A:273 , GLN A:276 , THR A:309 , GLY A:310 , SER A:311 , GLY A:312 , LYS A:313 , THR A:314 , LEU A:315 , THR A:661 , ASP A:664 , ARG A:688 , ARG A:691 , MG A:1101 , HOH A:1228 , HOH A:1231 , HOH A:1251 , HOH A:1272 , HOH A:1277 , HOH A:1278 , HOH A:1289 , HOH A:1313 , HOH A:1326binding site for residue ATP A 1102
3AC3SOFTWARETHR B:314 , ATP B:1102 , HOH B:1226 , HOH B:1231binding site for residue MG B 1101
4AC4SOFTWARELYS B:220 , LEU B:270 , VAL B:271 , MET B:272 , ARG B:273 , GLN B:276 , THR B:309 , GLY B:310 , SER B:311 , GLY B:312 , LYS B:313 , THR B:314 , LEU B:315 , THR B:661 , GLY B:662 , ASP B:664 , ARG B:688 , ARG B:691 , MG B:1101 , HOH B:1226 , HOH B:1231 , HOH B:1246 , HOH B:1290 , HOH B:1298 , HOH B:1320 , HOH B:1322 , HOH B:1331 , HOH B:1337 , HOH B:1348 , HOH B:1386binding site for residue ATP B 1102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XJX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XJX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XJX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XJX)

(-) Exons   (0, 0)

(no "Exon" information available for 4XJX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:861
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................hhhhhhhhhhhhhhhh..ee....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh......hhhhhhhhhhh..eeeee.....eeeee.....hhhhh.eeeee.....eeeeee..eeeeeeee.....hhhhhhhhhh..........hhhhhhh.eeeee....eeeee...hhhhhhhhhheeee.....ee.hhhhhhhhh.hhhhhhhhhhh.eee.....eee.hhhhhhhhhhhhhhhhhhhhh.........eeeee....hhhhhhhhhhhhhh......eeeeee.hhhhhhhhhhhhhh...........hhhhhhhhh.....eeeeehhhhhhhhhhh..hhhhh.eeeeeee.....hhhhhhhhhhhhh.eeeeeeee....hhhhh....hhhhhhh.eeeeehhhhhhhh.....eeeee......hhhhhh..hhhhhhhh.......hhhhhhhhhhhhhhhhhhhh..........eeeeee.hhhhhhhhhhhhhhhhhhhhhh........eeee....................hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh....eeee............eeeeeee...hhhhhhhhhhhhh.........eeeee...hhhhhhhhhhhh...hhhhhhh..hhhhhhhhee......ee.hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh...........hhhhhh..hhhhhhhhh.....hhhhhhhhhhhhhhh.............hhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xjx A  13 NFIVLDKYIKAEPTGDSYQSESDLERELIQDLRNQGYEFISVKSQSAMLANVREQLQNLNGVVFNDSEWRRFTEQYLDNPSDGILDKTRKIHIDYICDFIFDDERLENIYLIDKKNLMRNKVQIIQQFNRYDVTILVNGLPLVQIHLKKRGVAIREAFNQIHRYSKESFNSENSLFKYLQLFVISNGTDTRYFANTTKRDKNSFDFTMNWAKSDNTLIKDLKDFTATCFQKHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEYQRFSPDSVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGEAQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLNTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDLERSTIDAITLFGDKNTKNVVLEKSYTEYMEGFTDAATGEAKRGFMTVVSELEQRFPDPTSIESEKEKKDFVKLFGEYLRAENILQNYDEFATLKALQQIDLSDPVAVEKFKAEHYVDDEKFAELQTIRLPADRKIQDYRSAYNDIRDWQTTDWDDVVFEVDLLKSQEINLDY 892
                                    22        32        42        52        62        72        82        92       102       112       122       132       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       871       881       891 
                                                                                                                                                         140|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  857|                      
                                                                                                                                                          148                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   870                      


Chain B from PDB  Type:PROTEIN  Length:863
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................hhhhhhhhhhhhhhhh..ee....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh......hhhhhhhhhhh..eeeee.....eeeee.....hhhhh.eeeee......eeeeee..eeeeeeee.....hhhhhhhhh.....hhhhhhh.eeeee....eeeee...hhhhhhhhhheeee.....ee.hhhhhhhhh.hhhhhhhhhhh.eee.....eee.hhhhhhhhhhhhhhhhhhhhh.........eeeee....hhhhhhhhhhhhhh......eeeeee.hhhhhhhhhhhhhh...........hhhhhhhhh.....eeeeehhhhhhhhhhh..hhhhh.eeeeeee.....hhhhhhhhhhhhh.eeeeeeee....hhhhh....hhhhhhh.eeeeehhhhhhhh.....eeeee......hhhhhh..hhhhhhhh.......hhhhhhhhhhhhhhhhhhhh..........eeeeee.hhhhhhhhhhhhhhhhhhhhhh........eeee....................hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh....eeee............eeeeeee...hhhhhhhhhhhhh.........eeeee...hhhhhhhhhhhh...hhhhhhh..hhhhhhhhee......ee.hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhh..hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xjx B  13 NFIVLDKYIKAEPTGDSYQSESDLERELIQDLRNQGYEFISVKSQSAMLANVREQLQNLNGVVFNDSEWRRFTEQYLDNPSDGILDKTRKIHIDYICDFIFDDERLENIYLIDKKNLMRNKVQIIQQFENRYDVTILVNGLPLVQIHLKKRGVAIREAFNQIHFNSENSLFKYLQLFVISNGTDTRYFANTTKRDKNSFDFTMNWAKSDNTLIKDLKDFTATCFQKHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEYQRFSPDSVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGEAQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLNTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDLERSTIDAITLFGDKNTKNVVLEKSYTEYMEGFTDAATGEAKRGFMTVVSELEQRFPDPTSIESEKEKKDFVKLFGEYLRAENILQNYDEFATLKALQQIDLSDPVAVEKFKAEHYVDDEKFAELQTIRLPADRKIQDYRSAYNDIRDWQRRETTDWDDVVFEVDLLKSQEINLDYILGL 896
                                    22        32        42        52        62        72        82        92       102       112       122       132       148       158       168       178  ||   194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854     ||873       883       893   
                                                                                                                                                          141|                              181|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             860|                          
                                                                                                                                                           148                               188                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              870
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XJX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XJX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XJX)

(-) Gene Ontology  (9, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q304R3_ECOLX | Q304R3: 2w00 4be7 4beb 4bec 5j3n
        T1R1_ECOLX | P10486: 2w00 4be7 4beb 4bec

(-) Related Entries Specified in the PDB File

2w00 2W00 IS WILD TYPE ENZYME
4be7 4BE7 IS ANOTHER MUTANT OF THE SAME ENZYME
4beb 4BEB IS ANOTHER MUTANT OF THE SAME ENZYME
4bec 4BEC IS ANOTHER MUTANT OF THE SAME ENZYME