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(-) Description

Title :  CRYSTAL STRUCTURE OF TIMELESS_PAB DOMAIN IN SEMET-LABELLED FORM
 
Authors :  S. Xie, C. Qian
Date :  06 Jan 15  (Deposition) - 30 Sep 15  (Release) - 14 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  A,B,C,D  (1x)
Keywords :  Dna Damage Response, Replication (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Xie, O. Mortusewicz, H. T. Ma, P. Herr, R. R. Poon, T. Helleday, C. Qia
Timeless Interacts With Parp-1 To Promote Homologous Recombination Repair.
Mol. Cell V. 60 163 2015
PubMed-ID: 26344098  |  Reference-DOI: 10.1016/J.MOLCEL.2015.07.031

(-) Compounds

Molecule 1 - PROTEIN TIMELESS HOMOLOG
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: PAB DOMAIN (UNP RESIDUES 1000-1098)
    Gene: TIMELESS, TIM, TIM1, TIMELESS1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HTIM

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD
Biological Unit 3 (1x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4XHW)

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1B:43 -D:43

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XHW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XHW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XHW)

(-) Exons   (0, 0)

(no "Exon" information available for 4XHW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:89
                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh.hhhhhhhhhhhhhhhhhhh.....eee...hhhhhhhhhhhhhhhhhhhh............eee....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 4xhw A  12 NQSLHQEGFSIPLLWLQNCLIRAADDREESQAVPLVPLTEENEEAmENEQFQQLLRKLGVRPPASGQETFWRIPAKLSPTQLRRAAASL 103
                                    21        31        44        54     |  64        74        84        94         
                                                       40|              60-MSE                                       
                                                        44                                                           


Chain B from PDB  Type:PROTEIN  Length:92
                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh.......eee...hhhhhhhhhhhhhhhhhhhhh...........eee....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                 4xhw B  12 NQSLHQEGFSIPLLWLQNCLIRAADDREEDGCSQAVPLVPLTEENEEAmENEQFQQLLRKLGVRPPASGQETFWRIPAKLSPTQLRRAAASL 103
                                    21        31        41        51        61        71        81        91       101  
                                                                           60-MSE                                       


Chain C from PDB  Type:PROTEIN  Length:92
                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh..hhhhhhhhhhhhhhhhhhh......ee....hhhhhhhhhhhhhhhhhhhhh............ee....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                 4xhw C  10 NLNQSLHQEGFSIPLLWLQNCLIRAADDREEDSQAVPLVPLTEENEEAmENEQFQQLLRKLGVRPPASGQETFWRIPAKLSPTQLRRAAASL 103
                                    19        29        39 ||     51        61        71        81        91       101  
                                                          41|              60-MSE                                       
                                                           44                                                           


Chain D from PDB  Type:PROTEIN  Length:91
                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh.hhhhhhhhhhhhhhhhhhhhh.....eee...hhhhhhhhhhhhhhhhhhhhh...........eee....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 4xhw D  12 NQSLHQEGFSIPLLWLQNCLIRAADDREEDCSQAVPLVPLTEENEEAmENEQFQQLLRKLGVRPPASGQETFWRIPAKLSPTQLRRAAASL 103
                                    21        31        41|       52       |62        72        82        92       102 
                                                        41|               60-MSE                                       
                                                         43
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XHW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XHW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XHW)

(-) Gene Ontology  (27, 27)

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  4xhw
    Family and Domain Information: ProDom | SYSTERS
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TIM_HUMAN | Q9UNS1: 4xht 4xhu 5mqi

(-) Related Entries Specified in the PDB File

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