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(-) Description

Title :  CRYSTAL STRUCTURE OF ASH2L SPRY DOMAIN IN COMPLEX WITH RBBP5
 
Authors :  P. Zhang, C. P. Chaturvedi, J. S. Brunzelle, G. Skiniotis, M. Brand, A. Shilatifard, J. -F. Couture
Date :  10 Dec 14  (Deposition) - 28 Jan 15  (Release) - 28 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Histone, Mll1, Epigenetics, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Zhang, C. P. Chaturvedi, V. Tremblay, M. Cramet, J. S. Brunzelle, G. Skiniotis, M. Brand, A. Shilatifard, J. F. Couture
A Phosphorylation Switch On Rbbp5 Regulates Histone H3 Lys4 Methylation.
Genes Dev. V. 29 123 2015
PubMed-ID: 25593305  |  Reference-DOI: 10.1101/GAD.254870.114

(-) Compounds

Molecule 1 - SET1/ASH2 HISTONE METHYLTRANSFERASE COMPLEX SUBUNIT ASH2, SET1/ASH2 HISTONE METHYLTRANSFERASE COMPLEX SUBUNIT ASH2
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 380-495, 539-598
    Gene: ASH2L, ASH2L1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ASH2-LIKE PROTEIN,ASH2-LIKE PROTEIN
 
Molecule 2 - RETINOBLASTOMA-BINDING PROTEIN 5
    Chains: B
    Engineered: YES
    Fragment: UNP RESIDUES 344-355
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RBBP-5,RETINOBLASTOMA-BINDING PROTEIN RBQ-3
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:304 , HOH A:620 , GLU B:351 , PHE B:352 , HOH B:502 , HOH B:505binding site for residue GOL B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4X8P)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:485 -Pro A:486

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4X8P)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4X8P)

(-) Exons   (0, 0)

(no "Exon" information available for 4X8P)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:176
                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....ee.....eee.....eeeee......eeeeeeeeeee.....eeeeeee...............eeeee.....eee..eee..........eeeeeeee...eeeeee..eeeeeeee.......eeeeeee...eeeee..............ee.hhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4x8p A 285 SRVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPGSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTVSINFGPCFKYPPKDLTYRPMSDMG 504
                                   294       304       314       324       334       344       354       364       374       384       394    || 448       458       468       478       488       498      
                                                                                                                                            399|                                                            
                                                                                                                                             444                                                            


Chain B from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ............ Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 4x8p B 344 EYEERESEFDIE 355
                                   353
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4X8P)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4X8P)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4X8P)

(-) Gene Ontology  (27, 43)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:485 - Pro A:486   [ RasMol ]  
 

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  4x8p
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  RBBP5_HUMAN | Q15291
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ASH2L_HUMAN | Q9UBL3: 3rsn 3s32 3toj 4riq 4x8n 5f6k 5f6l
        RBBP5_HUMAN | Q15291: 3p4f 4x8n 5f6k 5f6l

(-) Related Entries Specified in the PDB File

4x8n