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(-) Description

Title :  CRYSTAL STRUCTURE OF THE MOT1 N-TERMINAL DOMAIN IN COMPLEX WITH TBP AND NC2 BOUND TO A PROMOTER DNA FRAGMENT
 
Authors :  A. Butryn, K. -P. Hopfner
Date :  20 Nov 14  (Deposition) - 26 Aug 15  (Release) - 26 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.78
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Transcription, Protein-Dna Complex, Swi2/Snf2 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Butryn, J. M. Schuller, G. Stoehr, P. Runge-Wollmann, F. Forster, D. T. Auble, K. P. Hopfner
Structural Basis For Recognition And Remodeling Of The Tbp:Dna:Nc2 Complex By Mot1.
Elife V. 4 2015
PubMed-ID: 26258880  |  Reference-DOI: 10.7554/ELIFE.07432

(-) Compounds

Molecule 1 - ECU11_1470 PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ECU11_1470
    Organism Common: MICROSPORIDIAN PARASITE
    Organism Scientific: ENCEPHALITOZOON CUNICULI (STRAIN GB-M1)
    Organism Taxid: 284813
    Strain: GB-M1
 
Molecule 2 - TATA-BINDING PROTEIN-ASSOCIATED PHOSPHOPROTEIN
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ECU11_0730
    Organism Common: MICROSPORIDIAN PARASITE
    Organism Scientific: ENCEPHALITOZOON CUNICULI
    Organism Taxid: 6035
 
Molecule 3 - SIMILARITY TO HELICASE MOT1
    Chains: C
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Taxid: 7111
    Gene: ECU03_1530
    Organism Common: MICROSPORIDIAN PARASITE
    Organism Scientific: ENCEPHALITOZOON CUNICULI (STRAIN GB-M1)
    Organism Taxid: 284813
    Strain: GB-M1
 
Molecule 4 - ECU04_1440 PROTEIN
    Chains: D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ECU04_1440
    Organism Common: MICROSPORIDIAN PARASITE
    Organism Scientific: ENCEPHALITOZOON CUNICULI (STRAIN GB-M1)
    Organism Taxid: 284813
    Strain: GB-M1
 
Molecule 5 - DNA (5'- D(P*CP*CP*AP*CP*CP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*CP*CP*T)-3')
    Chains: E
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES
 
Molecule 6 - DNA (5'- D(P*GP*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*GP*GP*TP*GP*G)-3')
    Chains: F
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 25)

Asymmetric/Biological Unit (1, 25)
No.NameCountTypeFull Name
1MSE25Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4WZS)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WZS)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ala C:540 -Pro C:541
2Phe C:566 -Pro C:567
3Glu D:66 -Pro D:67
4Lys D:157 -Pro D:158

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WZS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WZS)

(-) Exons   (0, 0)

(no "Exon" information available for 4WZS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:66
                                                                                                  
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhh....ee.hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 4wzs A  15 PISRLKRImQLNEDIGKIGASVPVVASKAIEmFLTEIVGLTLKEASEFIIRATESDPKFAFLKNmE  89
                                    24        34        44 |      54    ||  73        83    | 
                                   23-MSE                 46-MSE       59|                 88-MSE
                                                                        69                    


Chain B from PDB  Type:PROTEIN  Length:113
                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 4wzs B  12 LPKATVDKmVSSSVVPKESKEIFQNACIYFLNmLTLEANKACEEEKKKTISYEHVYKALKNLGFESYVESCmKEHENYESYIKQKDSGLTmEELHSQQIKLFQNAKLQFERSF 137
                                    21 ||     36        46  |     56        66        76        86 |      96    || 114|      124       134   
                                   20-MSE                  49-MSE                                 88-MSE      101|    |                      
                                       29                                                                      110    |                      
                                                                                                                    115-MSE                  


Chain C from PDB  Type:PROTEIN  Length:722
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....ee...............................hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh........ee.....hhhhhhhhhhhhh...........hhhhhhhhhhhhhh.......hhhhhhhhhhhh.hhhhhhhhhhhhh.......hhhhhhhhhhhh....hhhhhhhhhhhhh.......hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh........hhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh.....hhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh...hhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhh......hhhhhhhhhhhhhhh..hhhhhhhhhhhhh...........hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wzs C   1 mNRLEKFFTTLNTAQSKVLKGYTTDELVSQIKEYVDFTPYILKQTYRLLCGQASEDRRNGARILRSLmFQFKLVTDFKIEYKESSSIYLSSTGEQFNDERPIENVLDFFEQISDNLLSYEWYKRHGAFLAFAAmFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRIYPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNmVKNLSEESIDFLVAEVVLIEEKDEIREmAIKLLKKLPKNLILHFmNVIGGSLYEPYSEDDFVSYEDLYFTKSGINVVGKDEILKNRCLLFECImKSGLPDLQSTITTSRTFISLYRSVQALVPANIEELEYYFDRCKDLKmAPLKEFKKKLSAPGIRSIHPmVDPLYSDYTRmVASIEFPGLERATALFEVETCKQFLHLFSKmITEYYDAEKISIDNFLLKAYEGLASGKDGFLSFFEVFNTRLLAHSFFHKIGSLENRLDFFSKTIHIYTKTSQIQKIGFVFDDALREKNITVINGFmRSLEFNEKFVRKALEDLDVELLDAVLmSGDHSFNPLFVKPLLRNISGNIDREASSKVLSKVIPTLGFSTNTKISKDLLEmIEREKKSLESL 778
                            |       10        20        30        40        50        60       |70        80        90      |145       155       165       175   |   185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375|      385       395       405     ||418     | 428       438       448       458       468    |  478     ||490       500  ||   516       526 |     536       546  |    556   |   566       576       586    |  596       606       616       626       636       646       656       666       676       686|      696       706       716       726       736       746       756       766|      776  
                            1-MSE                                                             68-MSE                       97|                                 179-MSE                                                                                                                                                                                              376-MSE                     404-MSE411|      424-MSE                                          473-MSE    484|             503|               528-MSE              549-MSE    560-MSE                        591-MSE                                                                                         687-MSE                    714-MSE                                              767-MSE       
                                                                                                                           143                                                                                                                                                                                                                                                                          415                                                                   487              510                                                                                                                                                                                                                                                                            


Chain D from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee.....hhhhhhhhh..ee........eeeee....eeeeee...eeeeeee.hhhhhhhhhhhhhhhhhh........eeeeeeeeeee......hhhhhhhhh.............eeeee....eeeee.....eeeeee.hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wzs D  19 SGIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVImRIREPKTTALIFASGKmVITGAKSEKSSRmAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRmVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQHR 196
                                    28        38        48        58   |    68        78|       88   |    98       108       118       128       138       148      |158       168       178       188        
                                                                      62-MSE           79-MSE       92-MSE                                                        155-MSE                                     


Chain E from PDB  Type:DNA  Length:20
                                                    
                 4wzs E   2 CCACCCCCTTTTATAGCCCT  21
                                    11        21


Chain F from PDB  Type:DNA  Length:19
                                                   
                 4wzs F   5 GGGCTATAAAAGGGGGTGG  23
                                    14
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WZS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WZS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WZS)

(-) Gene Ontology  (36, 41)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala C:540 - Pro C:541   [ RasMol ]  
    Glu D:66 - Pro D:67   [ RasMol ]  
    Lys D:157 - Pro D:158   [ RasMol ]  
    Phe C:566 - Pro C:567   [ RasMol ]  
 

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(-) Related Entries Specified in the PDB File

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