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(-) Description

Title :  CRYSTAL STRUCTURE OF THE 2B PROTEIN SOLUBLE DOMAIN FROM HEPATITIS A VIRUS
 
Authors :  D. Garriga, L. Vives-Adrian, M. Buxaderas, F. Ferreira-Da-Silva, B. A S. Macedo-Ribeiro, P. J. Pereira, N. Verdaguer
Date :  20 Nov 14  (Deposition) - 28 Jan 15  (Release) - 18 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (5x)
Biol. Unit 2:  A,B  (1x)
Keywords :  Fiber, Viral Recruitment Machinery, Viral Protein, Hepatitis A Virus, Non-Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. Vives-Adrian, D. Garriga, M. Buxaderas, J. Fraga, P. J. Pereira, S. Macedo-Ribeiro, N. Verdaguer
Structural Basis For Host Membrane Remodeling Induced By Protein 2B Of Hepatitis A Virus.
J. Virol. V. 89 3648 2015
PubMed-ID: 25589659  |  Reference-DOI: 10.1128/JVI.02881-14
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GENOME POLYPROTEIN
    ChainsA, B
    EC Number3.6.1.15, 3.4.22.28, 2.7.7.48
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPTYB1
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 765-981
    Organism CommonHHAV
    Organism ScientificHUMAN HEPATITIS A VIRUS GENOTYPE IB (ISOLATE HM175)
    Organism Taxid12098
    StrainISOLATE HM175

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (5x)AB
Biological Unit 2 (1x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
Biological Unit 1 (1, 10)
No.NameCountTypeFull Name
1GOL10Ligand/IonGLYCEROL
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:854 , ARG A:855 , HOH A:1102 , ARG B:865binding site for residue GOL A 1001
2AC2SOFTWAREGLU A:846 , HIS A:847 , ALA B:965binding site for residue GOL A 1002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WZN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WZN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WZN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WZN)

(-) Exons   (0, 0)

(no "Exon" information available for 4WZN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee...eeee..eeee..eeeeeeeee.......eeeeee..eeeeeeee......eee.hhhhhhhhhhhh...............hhhhhhhhh......hhhhhhhhhhhhh.eeeehhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4wzn A 838 KISLFYTEEHEIMKFSWRGVTADTRALRRFGFSLAAGRSVWTLEMDAGVLTGRLIRLNDEKWTEMKDDKIVSLIEKFTSNKYWSKVNFPHGMLDLEEIAANSKDFPNMSETDLCFLLHWLNPKKINLADRMLGLSGVQ 975
                                   847       857       867       877       887       897       907       917       927       937       947       957       967        

Chain B from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee....eee..eeeee...eeeeeee.......eeeeee..eeeeeeee......eee.hhhhhhhhhhhh...............hhhhhhhhh......hhhhhhhhhhhhh.ee.hhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wzn B 835 SQAKISLFYTEEHEIMKFSWRGVTADTRALRRFGFSLAAGRSVWTLEMDAGVLTGRLIRLNDEKWTEMKDDKIVSLIEKFTSNKYWSKVNFPHGMLDLEEIAANSKDFPNMSETDLCFLLHWLNPKKINLADRMLGLSGVQE 976
                                   844       854       864       874       884       894       904       914       924       934       944       954       964       974  

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WZN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WZN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WZN)

(-) Gene Ontology  (43, 43)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POLG_HAVHM | P086171hav 1qa7 2h6m 2h9h 2hal 5wte 5wtf 5wth

(-) Related Entries Specified in the PDB File

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