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(-) Description

Title :  CRYSTAL STRUCTURE OF U-BOX 1 OF LUBX / LEGU2 / LPP2887 FROM LEGIONELLA PNEUMOPHILA STR. PARIS
 
Authors :  P. J. Stogios, A. T. Quaile, T. Skarina, A. Stein, R. Di Leo, V. Yim, A. Sa A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date :  18 Nov 14  (Deposition) - 14 Jan 15  (Release) - 19 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha/Beta Protein, Effector, Structural Genomics, Psi-Biology, Mcsg, Midwest Center For Structural Genomics, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. T. Quaile, M. L. Urbanus, P. J. Stogios, B. Nocek, T. Skarina, A. W. Ensminger, A. Savchenko
Molecular Characterization Of Lubx: Functional Divergence O The U-Box Fold By Legionella Pneumophila.
Structure V. 23 1459 2015
PubMed-ID: 26146184  |  Reference-DOI: 10.1016/J.STR.2015.05.020

(-) Compounds

Molecule 1 - E3 UBIQUITIN-PROTEIN LIGASE LUBX
    Chains: A
    EC Number: 6.3.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P15TV-LIC
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: RIL
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 9-117
    Gene: LUBX, LPP2887
    Organism Scientific: LEGIONELLA PNEUMOPHILA (STRAIN PARIS)
    Organism Taxid: 297246
    Strain: PARIS
    Synonym: LEGIONELLA U-BOX PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1CSD1Mod. Amino Acid3-SULFINOALANINE
2MSE1Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4WZ0)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WZ0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WZ0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WZ0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WZ0)

(-) Exons   (0, 0)

(no "Exon" information available for 4WZ0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.....hhhhh..........eee.....eeehhhhhhhhhhh..........hhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 4wz0 A   9 IDHKSKYLREAALEANLSHPETTPTmLTcPIDSGFLKDPVITPEGFVYNKSSILKWLETKKEDPQSRKPLTAKDLQPFPELLIIVNRFVETQTNYEKLKNRLVQNARVA 117
                                    18        28     |  38        48        58        68        78        88        98       108         
                                                    34-MSE                                                                               
                                                       37-CSD
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WZ0)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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  4wz0
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LUBX_LEGPA | Q5X159: 4wz2 4wz3 4xi1

(-) Related Entries Specified in the PDB File

4wz1 U-BOX 2 (WILD-TYPE)
4wz2 U-BOX 2, ILE175MET MUTANT
4wz3 U-BOX 1 IN COMPLEX WITH UBE2D2 RELATED ID: MCSG-APC108251 RELATED DB: TARGETTRACK