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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF NS3 HELICASE FROM HCV WITH A BOUND INHIBITOR AT 2.42 A RESOLUTION
 
Authors :  D. R. Davies, H. Kim, D. Lorimer
Date :  14 Nov 14  (Deposition) - 23 Dec 15  (Release) - 23 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.42
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Helicase, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. O. Buckman, K. Kossen, S. Misialek, S. Stevens, R. Rajagopalan, D. Ruhmund, L. Hooi, N. Snarskaya, V. Serebryany, G. Wang, A. Stoycheva, J. B. Nicholas, D. R. Davies, S. Brunton, C. Montalbetti D. Weddell, C. Goodwin, D. Schonfeld, O. Mather, R. Cheng, L. Blatt, L. Beigelman
Crystal Structure Of Ns3 Helicase From Hcv With A Bound Inhibitor
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NS3
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 180-630
    Mutation: YES
    Organism Scientific: HEPATITIS C VIRUS
    Organism Taxid: 11103

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
13VZ2Ligand/Ion{6-(3,5-DIAMINOPHENYL)-1-[4-(PROPAN-2-YL)BENZYL]-1H-INDOL-3-YL}ACETIC ACID
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
13VZ1Ligand/Ion{6-(3,5-DIAMINOPHENYL)-1-[4-(PROPAN-2-YL)BENZYL]-1H-INDOL-3-YL}ACETIC ACID
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
13VZ1Ligand/Ion{6-(3,5-DIAMINOPHENYL)-1-[4-(PROPAN-2-YL)BENZYL]-1H-INDOL-3-YL}ACETIC ACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:232 , THR A:254 , GLY A:255 , THR A:269 , GLY A:271 , LYS A:272 , ALA A:275 , TRP A:501 , TYR A:502 , GLU A:503 , HOH A:805 , HOH A:863 , HOH A:890binding site for residue 3VZ A 701
2AC2SOFTWAREVAL B:232 , THR B:254 , GLY B:255 , THR B:269 , GLY B:271 , LYS B:272 , ALA B:275 , TRP B:501 , TYR B:502 , GLU B:503binding site for residue 3VZ B 701

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WXR)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Asp A:441 -Pro A:442
2Asp B:441 -Pro B:442

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WXR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WXR)

(-) Exons   (0, 0)

(no "Exon" information available for 4WXR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:427
                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeee........hhhhhhhhhh...eeeee.hhhhhhhhhhhhh...eee....ee.....eeeeehhhhhhh.......eeee......hhhhhhhhhhhhhhh......eeeeee.............eeeee......eee..eeehhhhhh..eeeee..hhhhhhhhhhhhhh....eeee....hhhhh.....eeeee........eeee..eeeeeeee.......eeeeeeee.hhhhhhhhhh.......eeeee...........hhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.........hhhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhhhhhhhhh......hhhhhhhh.hhhhh...ee...........ee..hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wxr A 190 PPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKDPNIRTGVRTITTGSPITYSTYGKFLADGGCSAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATATPPGSVTVSHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVSTDATGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGRGKPGIYRFVAPGERPSGMFDSSVLCECYDAGCAWYELTPAETTVRLRAYMNTPGLPVCQDHLEFWEGVFTGLTHIDAHFLSQTKQSGENFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMTCMSADL 627
                                   199       209       219       229       239    || 253       263       273      |285       295       305       315       325       335       345       355       365       375       385       395       405       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       
                                                                                244|                            280|                                                                                                                               413|                                                                                                                                                                                                                
                                                                                 249                             283                                                                                                                                419                                                                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:438
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............eeeeee........hhhhhhhhhh...eeeee.hhhhhhhhhhhhh.....eee....ee.....eeeeehhhhhhh.........eeeee.....hhhhhhhhhhhhhhhhhhh..eeeeee.............eeeee......eee..eeehhhhh...eeeee..hhhhhhhhhhhhhhh...eeee....hhhhh.....eeeee.........eeee..eeeeeeee.......eeeeeeee.hhhhhhhhhh.......eeeee...........hhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.........hhhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhhhhhhhhh......hhhhhhhh.hhhhh...ee...........ee..hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4wxr B 186 DNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATATPPGSVTVSHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVSTDALTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGRGKPGIYRFVAPGERPSGMFDSSVLCECYDAGCAWYELTPAETTVRLRAYMNTPGLPVCQDHLEFWEGVFTGLTHIDAHFLSQTKQSGENFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMTCMSADLEV 629
                                   195       205       215       225       235       245||     257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407      |421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621        
                                                                                      246|                                                                                                                                                                  414|                                                                                                                                                                                                                  
                                                                                       249                                                                                                                                                                   419
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WXR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WXR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WXR)

(-) Gene Ontology  (14, 14)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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(-) Related Entries Specified in the PDB File

4wxp 4WXP CONTAINS THE SAME PROTEIN COMPLEXED WITH A FRAGMENT-BASED INHIBITOR