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(-) Description

Title :  CRYSTAL STRUCTURE OF BINARY COMPLEX GON7-PCC1
 
Authors :  W. Zhang, H. Van Tilbeurgh
Date :  13 Nov 14  (Deposition) - 18 Mar 15  (Release) - 26 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.99
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A (1x),D (1x)
Biol. Unit 2:  B,E  (1x)
Biol. Unit 3:  C,F  (1x)
Biol. Unit 4:  A (1x),D (1x)
Keywords :  Keops, Gon7-Pcc1, Trna T6A, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Zhang, B. Collinet, M. Graille, M. C. Daugeron, N. Lazar, D. Libri, D. Durand, H. Van Tilbeurgh
Crystal Structures Of The Gon7/Pcc1 And Bud32/Cgi121 Complexes Provide A Model For The Complete Yeast Keops Complex.
Nucleic Acids Res. V. 43 3358 2015
PubMed-ID: 25735745  |  Reference-DOI: 10.1093/NAR/GKV155

(-) Compounds

Molecule 1 - EKC/KEOPS COMPLEX SUBUNIT PCC1
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
    Expression System Taxid: 866768
    Gene: PCC1, YKR095W-A
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: POLARIZED GROWTH CHROMATIN-ASSOCIATED CONTROLLER 1
 
Molecule 2 - EKC/KEOPS COMPLEX SUBUNIT GON7
    Chains: D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
    Expression System Taxid: 866768
    Gene: GON7, LDB6, PCC2, YJL184W, J0420
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: LOW-DYE-BINDING PROTEIN 6,POLARIZED GROWTH CHROMATIN- ASSOCIATED CONTROLLER 2

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A (1x)  D (1x)  
Biological Unit 2 (1x):  B  E 
Biological Unit 3 (1x):   C  F
Biological Unit 4 (1x): A (1x)  D (1x)  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MSE9Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2MSE1Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (2, 3)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:46 , SER A:48 , LEU A:55 , GLN A:57binding site for residue ACT A 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WX8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WX8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WX8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WX8)

(-) Exons   (0, 0)

(no "Exon" information available for 4WX8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:83
                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee..hhhhhhhhhhhhh.........eeeeeeee..eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------- Transcript
                 4wx8 A   8 SLDHTLELKIPFETERQATIATKVLSPDPILKPQDFQVDYSSEKNVmLVQFRSIDDRVLRVGVSSIIDSIKTIVEAmDVLSHH  90
                                    17        27        37        47      | 57        67        77      | 87   
                                                                         54-MSE                        84-MSE  


Chain B from PDB  Type:PROTEIN  Length:84
                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeee..hhhhhhhhhhhh..........eeeeeeee..eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                 4wx8 B   7 KSLDHTLELKIPFETERQATIATKVLSPDPILKPQDFQVDYSSEKNVmLVQFRSIDDRVLRVGVSSIIDSIKTIVEAmDVLSHH  90
                                    16        26        36        46       |56        66        76       |86    
                                                                          54-MSE                        84-MSE  


Chain C from PDB  Type:PROTEIN  Length:81
                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee..hhhhhhhhhhhh......hhh.eeeeeeee..eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 4wx8 C   8 SLDHTLELKIPFETERQATIATKVLSPDPILKPQDFQVDYSSEKNVmLVQFRSIDDRVLRVGVSSIIDSIKTIVEAmDVLS  88
                                    17        27        37        47      | 57        67        77      | 87 
                                                                         54-MSE                        84-MSE


Chain D from PDB  Type:PROTEIN  Length:64
                                                                                                
               SCOP domains ---------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee...eeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                 4wx8 D   2 KLPVAQYSAPDGVEKSFAPQLTYLGQLRTQLTGLQDDINEFLTGRmELAKNADEKRIQEEINQL 112
                                    11        63        73        83     |  93||     108    
                                             20|                        89-MSE4|            
                                              63                             100            


Chain E from PDB  Type:PROTEIN  Length:61
                                                                                             
               SCOP domains ------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.....eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------- Transcript
                 4wx8 E   2 KLPVAQYSAPDGVEKSFAPLTYLGQLRTQLTGLQDDINEFLTGRmELADEKRIQEEINQLL 113
                                    11        64        74        84    |  102       112 
                                             20|                       89-MSE            
                                              64                          101            


Chain F from PDB  Type:PROTEIN  Length:50
                                                                                  
               SCOP domains -------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....eeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                 4wx8 F   2 KLPVAQYSAPDGVEKSFAPLTYLGQLRTQLTGLQDDINEFLTGRmELAKN  94
                                    11        64        74        84    |   94
                                             20|                       89-MSE 
                                              64
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WX8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WX8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WX8)

(-) Gene Ontology  (18, 29)

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