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(-) Description

Title :  STONUSTOXIN STRUCTURE
 
Authors :  A. M. Ellisdon, S. Panjikar, J. C. Whisstock, S. Mcgowan
Date :  06 Nov 14  (Deposition) - 02 Dec 15  (Release) - 30 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Macpf Cdc, Membrane Attack Complex, Perforin Cholesterol Dependent, Cytolysin, Venom, Pry, Spry, Thioredoxin Focal Adhesion Targeting, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. Ellisdon, C. F. Reboul, S. Panjikar, K. Huynh, C. A. Oellig, K. L. Winter, M. A. Dunstone, W. C. Hodgson, J. Seymour, P. K. Dearden, R. K. Tweten, J. C. Whisstock, S. Mcgowan
Stonefish Toxin Defines An Ancient Branch Of The Perforin-Like Superfamily.
Proc. Natl. Acad. Sci. Usa V. 112 15360 2015
PubMed-ID: 26627714  |  Reference-DOI: 10.1073/PNAS.1507622112

(-) Compounds

Molecule 1 - STONUSTOXIN SUBUNIT ALPHA
    Chains: A
    Organism Common: ESTUARINE STONEFISH
    Organism Scientific: SYNANCEIA HORRIDA
    Organism Taxid: 13279
    Synonym: SNTX SUBUNIT ALPHA
 
Molecule 2 - STONUSTOXIN SUBUNIT BETA
    Chains: B
    Organism Common: ESTUARINE STONEFISH
    Organism Scientific: SYNANCEIA HORRIDA
    Organism Taxid: 13279
    Synonym: SNTX SUBUNIT BETA

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4WVM)

(-) Sites  (0, 0)

(no "Site" information available for 4WVM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WVM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WVM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WVM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WVM)

(-) Exons   (0, 0)

(no "Exon" information available for 4WVM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:612
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee..........ee.........eeeeeeeeeeee...hhhhhhhhh..hhhhhhhhhh.....hhhhhhh..........eeeeeeeeeeeee...eeeeeeee..eeeeeee.....hhhhhhhhhh........hhhhhhhhhh.eeeeee.........hhhhhhhhhhhh.....eeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh....ee..hhhhhhhhhhh....eeeeeee......hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee........eeeeeee..eeee.........hhhhh.hhhhhhh...............eee....eeee...................eee.......eeeeeeeeee.eeeeeee.......hhhhh......eeeeeee...eeeeee..eeeee........eeeeeee....eeeeeeee..eeeeeeeee......eeeeee.......eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4wvm A   4 DLVMPALGRPFTLGMLYDARREKLISSNAQRSSEFKIVASDSTESKSSAMDIEASLGVSFLGGLVEVGGSAKYLNNTKKYQNQSRVTLKYKATTVYKQFTHVVTSILYGANAFFVSDSDKVDIQGKMEAAIKKIPTISILTDEEKSLASNLSCKFHGDFLLESLPTTFEDAVKTYQTLPTNSVPMKVWLAPNVSKVRRIHTTLEELHKLKRRANEAMDVKLVQRIPLIHDKISNFQQIFQDYMLTVQKKIAEKLPLVREQSLQKIIDDRAQSPFSNEKVSKWLDAVEREIAVLKSCAGMVEGTQAKFVSNQTELDREVLVGKVKHAVCFIFTSVERNDPYLKVLSDYWESSTEDKWCFSTEVVLKMQQRAQTFCDHVNDFEKSRNVGFFITALENGKFQGASIYYYKEGSLATQDFTFPRMPFVQGYKKRSDLLWYACDLTFDRNTINNWISLSNDTFAASEHGKRQNYPKHPERFVSFNQVLCNEGLMGKHYWEVEWNGYIDVGIAYISIPRKIDFASAFGYNTYSWVLSYNPKIGYIERHKKREYNVRAPNPGFKRLGLFLDWRYGSISFYAVSSDEVHHLHTFKTKFTEPVYPAFSIGPAGNHGTLRLL 703
                                    13        23    ||  48        58        68        78        88        98       108       138       148       158||     174       191       201       211       221       231|      248||     273       283       293       303       313       323       338       348       358       368       378       388       398       408       418       428|      449       459       469       479       489       499       509       519       529       539   ||  550       560       570       580       590       600   ||  611       621       631       641       651       661       671       681       691       701  
                                                   28|                                                                      117|                  159|              183|                                     231|       249|                                                               331|                                                                                        428|                                                                                                    543|                                                        604|                                                                                                 
                                                    44                                                                       138                   166               191                                      239        265                                                                337                                                                                         440                                                                                                     545                                                         606                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:616
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..........ee.........eeeeeeeeeee...hhhhhhhhh..hhhhhhhhhh.......hhhhhhh........eeeeeeeeeeeee...eeeeeeeeeeeeeeeeee......hhhhhhhhhhhhhhhh....hhhhhhhh.eeeeeee.........hhhhhhhhhhhh.....eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee..hhhhhhhhhh.....eeeeeee......hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeee........eeeeeee..eeee.........hhhhh.hhhhhhh................eee....eee................eee.......eeeeeeee....eeeee.........hhhhh......eeeee...eeee..eeee.........eeeeeee....eeeeeeee..eeeeeeeee.......eeeee.....eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wvm B   4 DILVVAALGRPFTLGMLYDARNDKLIESSQPSSAFEIIASDSTDDKSSLMDIEASLKASFLGGLVEVGGSAKYLNNQKKFKNQSRVTLQYKATTSFKQATHVVIGILYGANAFFVFDSNKVDSTNVQEIQGQMEAVIKKIPSVTGEETDITNSFSCEFHGDFFLTTNPTTFEDAVKTYQQLPQMMAVPMTVWLVPMSTPILRKVRNTLEAIVQVQMRCNDALDDPTVNLFTEVQKKLSDFQKICDDHMSKLQATIAKKLFAIDEDESALLNLFEENLQSPFNIESLNMWMEFEEREINVLRSCMDILTKAKPKVIFNQGVLFKGLYDSKVKHALCYVFTNVTKNDVFLNVLNEFLDSPPKKLRPSPKDYWYSYDDIPETMREKAYLFRNLAKEMNNRCVHFFVTAIHNPKQEGAGIHYYRESIQIIDEFTKPYMPGVESIKDRRELQWYDCELTLDPETAHQVLTLSEGNKKAVSTKSPTDHLEKFSHFQQVMCTKGLSGRHYWELEWSGYVGAGVTYKGIGRKTSTSDSSLGKNEKSWLFEYSYQQIHNSKKTRVTVSSTGFKLLGVYLDWPAGTLSFYMVNKAWVTHLHTFHTKFNEAVYPAFLIGVNGQIKLL 700
                                    13        23     || 49        59        69        79        89        99       109       139       149       159       169       179  ||   199       209       219       229    || 243     ||267       277       287       297       307       317       327 ||    340       350       360       370       380       390       400       410       420       433       443       453       463       473       483       493       503       513       523       533       543    || 555       565       575       585       595       605       615   ||  629       639       649       659       669       679       694      
                                                    29|                                                                    117|                                         182|                                      234|       249|                                                              329|                                                                                            428|                                                                                                                 548|                                                                 619|                                                            687|       
                                                     46                                                                     138                                          193                                       239        264                                                               333                                                                                             432                                                                                                                  551                                                                  624                                                             693
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WVM)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (3, 6)

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