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(-) Description

Title :  STRUCTURE OF THE PTP-LIKE MYO-INOSITOL PHOSPHATASE FROM SELENOMONAS RUMINANTIUM IN COMPLEX WITH MYO-INOSITOL-(1,4,5)-TRIKISPHOSPHATE
 
Authors :  L. M. Bruder, S. C. Mosimann
Date :  30 Oct 14  (Deposition) - 04 Nov 15  (Release) - 04 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. M. Bruder
Structure Of The Ptp-Like Phytase From Selenomonas Ruminantium In Complex With Myo-Inositol-(1, 4, 5)-Trikisphosphate
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MYO-INOSITOL PHOSPHOHYDROLASE
    Chains: A, B
    EC Number: 3.1.3.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28B
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 28-346
    Gene: PHYA
    Mutation: YES
    Organism Scientific: SELENOMONAS RUMINANTIUM
    Organism Taxid: 971

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 9)

Asymmetric/Biological Unit (4, 9)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL4Ligand/IonGLYCEROL
3I3P2Ligand/IonD-MYO-INOSITOL-1,4,5-TRIPHOSPHATE
4PO42Ligand/IonPHOSPHATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:189 , ASP A:223 , HIS A:224 , SER A:252 , GLU A:253 , ALA A:254 , GLY A:255 , VAL A:256 , GLY A:257 , ARG A:258 , LYS A:305 , TYR A:309 , PO4 A:402 , HOH A:503 , HOH A:506 , HOH A:554 , HOH A:568 , HOH A:606binding site for residue I3P A 401
2AC2SOFTWARESER A:252 , GLU A:253 , ALA A:254 , GLY A:255 , VAL A:256 , GLY A:257 , ARG A:258 , I3P A:401 , HOH A:554binding site for residue PO4 A 402
3AC3SOFTWARETYR A:239 , PRO A:243 , GLN A:244 , LYS A:270 , HOH A:542binding site for residue GOL A 403
4AC4SOFTWAREASN A:60 , ASP A:61 , ARG A:68 , HOH A:634binding site for residue GOL A 404
5AC5SOFTWARELYS B:189 , ASP B:223 , HIS B:224 , SER B:252 , GLU B:253 , ALA B:254 , GLY B:255 , VAL B:256 , GLY B:257 , ARG B:258 , LYS B:305 , TYR B:309 , PO4 B:402 , HOH B:502 , HOH B:513 , HOH B:519 , HOH B:525 , HOH B:531binding site for residue I3P B 401
6AC6SOFTWARESER B:252 , GLU B:253 , ALA B:254 , GLY B:255 , VAL B:256 , GLY B:257 , ARG B:258 , I3P B:401 , HOH B:513binding site for residue PO4 B 402
7AC7SOFTWARETHR B:333binding site for residue CL B 403
8AC8SOFTWARETYR B:239 , PRO B:243 , GLN B:244 , LYS B:270 , HOH B:538 , HOH B:541binding site for residue GOL B 404
9AC9SOFTWAREASP B:59 , ASN B:60 , ASP B:61 , ARG B:68 , HOH B:535binding site for residue GOL B 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WU2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WU2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WU2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WU2)

(-) Exons   (0, 0)

(no "Exon" information available for 4WU2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:313
                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhh.eeeeee............ee........hhhhh..........hhhhhheeee...hhhhhhhhhhhhhh.....eeeeeee...eeee..eeeeeee.hhh.....hhhhhhhhhhhhhhhh...eeeee..hhhhh....eeee...eehhhhhhhhh..eeeeeee......hhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhhhhh...hhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wu2 A  34 TVTEPVGSYARAERPQDFEGFVWRLDNDGKEALPRNFRTSADALRAPEKKFHLDAAYVPSREGMDALHISGSSAFTPAQLKNVAAKLREKTAGPIYDVDLRQESHGYLDGIPVSWYGERDWANLGKSQHEALADERHRLHAALHKTVYIAPLGKHKLPEGGEVRRVQKVQTEQEVAEAAGMRYFRIAATDHVWPTPENIDRFLAFYRTLPQDAWLHFHSEAGVGRTTAFMVMTDMLKNPSVSLKDILYRQHEIGGFYYGEFPIKTKDKDSWKTKYYREKIVMIEQFYRYVQENRADGYQTPWSVWLKSHPAKA 346
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343   


Chain B from PDB  Type:PROTEIN  Length:313
                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhh.eeeeee............ee........hhhhh..........hhhhhheeee...hhhhhhhhhhhhhh.....eeeeeee...eeee..eeeeeee.hhh.....hhhhhhhhhhhhhhhhh..eeeee..hhhhh....eeee...eehhhhhhhhh..eeeeeee......hhhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhhhh...hhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wu2 B  34 TVTEPVGSYARAERPQDFEGFVWRLDNDGKEALPRNFRTSADALRAPEKKFHLDAAYVPSREGMDALHISGSSAFTPAQLKNVAAKLREKTAGPIYDVDLRQESHGYLDGIPVSWYGERDWANLGKSQHEALADERHRLHAALHKTVYIAPLGKHKLPEGGEVRRVQKVQTEQEVAEAAGMRYFRIAATDHVWPTPENIDRFLAFYRTLPQDAWLHFHSEAGVGRTTAFMVMTDMLKNPSVSLKDILYRQHEIGGFYYGEFPIKTKDKDSWKTKYYREKIVMIEQFYRYVQENRADGYQTPWSVWLKSHPAKA 346
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WU2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WU2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WU2)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q7WUJ1_SELRU | Q7WUJ1: 1u24 1u25 1u26 2b4o 2b4p 2b4u 2psz 2pt0 3d1h 3d1o 3d1q 3mmj 3moz 3o3l 4wty

(-) Related Entries Specified in the PDB File

3mmj 3MMJ CONTAIN THE SAME PROTEIN COMPLEXED WITH ANOTHER SUBSTRATE
4wty CONTAINS THE SAME PROTEIN IN COMPLEX WITH ANOTHER SUBSTRATE