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(-) Description

Title :  CRYSTAL STRUCTURE OF THE THIRD FNIII DOMAIN OF INTEGRIN BETA4
 
Authors :  N. Alonso-Garcia, H. Urien, J. M. De Pereda
Date :  30 Oct 14  (Deposition) - 11 Feb 15  (Release) - 22 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.61
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Immunoglobulin Fold, Fibronectin Type Iii, Integrin, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Alonso-Garcia, I. Garcia-Rubio, J. A. Manso, R. M. Buey, H. Urien, A. Sonnenberg, G. Jeschke, J. M. De Pereda
Combination Of X-Ray Crystallography, Saxs And Deer To Obtain The Structure Of The Fniii-3, 4 Domains Of Integrin Alpha6Beta4
Acta Crystallogr. , Sect. D V. 71 969 2015
PubMed-ID: 25849406  |  Reference-DOI: 10.1107/S1399004715002485

(-) Compounds

Molecule 1 - INTEGRIN BETA-4
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: MODIFIED PET15B
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: THIRD FNIII DOMAIN, UNP RESIDUES 1457-1548
    Gene: ITGB4
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: GP150

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric Unit (3, 4)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2EDO1Ligand/Ion1,2-ETHANEDIOL
3SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3SO42Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
11PE-1Ligand/IonPENTAETHYLENE GLYCOL
2EDO1Ligand/Ion1,2-ETHANEDIOL
3SO4-1Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:1500 , GLU A:1501 , HIS A:1503 , HOH A:1715 , HOH A:1764 , HOH A:1772 , HOH A:1778 , HOH A:1804binding site for residue SO4 A 1601
2AC2SOFTWAREARG A:1475 , SER A:1514 , HOH A:1703binding site for residue SO4 A 1602
3AC3SOFTWAREGLN A:1495 , LEU A:1496 , LEU A:1497 , ASN A:1498 , GLY A:1499 , HOH A:1727 , GLN B:1495 , LEU B:1496 , LEU B:1497 , ASN B:1498 , GLY B:1499 , VAL B:1527binding site for residue 1PE A 1603
4AC4SOFTWAREGLN B:1488 , TYR B:1490 , ASN B:1506 , ILE B:1507binding site for residue EDO B 1601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WTW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WTW)

 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:95
                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeee.....eeee.........eeeeeeeeee......eeeee......eeee.......eeeeeeeeee..ee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                4wtw A 1454 SHMVPDTPTRLVFSALGPTSLRVSWQEPRCERPLQGYSVEYQLLNGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITI 1548
                                  1463      1473      1483      1493      1503      1513      1523      1533      1543     


Chain B from PDB  Type:PROTEIN  Length:93
                                                                                                                              
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeee..eeeee.........eeeeeeeeee......eeeee......eeee.......eeeeeeeeee..ee...eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                4wtw B 1456 MVPDTPTRLVFSALGPTSLRVSWQEPRCERPLQGYSVEYQLLNGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITI 1548
                                  1465      1475      1485      1495      1505      1515      1525      1535      1545
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WTW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WTW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WTW)

(-) Gene Ontology  (31, 31)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ITB4_HUMAN | P16144: 1qg3 2yrz 3f7p 3f7q 3f7r 3fq4 3fso 3h6a 4q58 4wtx

(-) Related Entries Specified in the PDB File

2yrz NMR STRUCTURE OF THIS DOMAIN OF INTEGRIN BETA4. NOT IDENTICAL CONSTRUCT.