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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF CYP119 COMPLEXED WITH 4-(4-FLOUROPHENYL)-1H-IMIDAZOLE
 
Authors :  Y. Madrona
Date :  17 Oct 14  (Deposition) - 18 Feb 15  (Release) - 18 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Cytochrome P450, 4-(4-Flourophenyl)-1H-Imidazole Ligand Bound, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Basudhar, Y. Madrona, S. Kandel, J. N. Lampe, P. Ortiz De Montellano
Two Dimentional Nmr And X-Ray Analysis Of Cyp119 Ligand Dependent Conformational Dynamics
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CYTOCHROME P450 119
    Chains: A, B
    EC Number: 1.14.-.-, 1.11.1.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCWORI
    Expression System Strain: DH5 ALPHA
    Expression System Taxid: 562
    Gene: CYP119, SACI_2081
    Organism Scientific: SULFOLOBUS ACIDOCALDARIUS
    Organism Taxid: 330779
    Strain: ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770
    Synonym: PEROXIDASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
13SQ2Ligand/Ion4-(4-FLUOROPHENYL)-1H-IMIDAZOLE
2HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:152 , LEU A:155 , GLY A:156 , ALA A:209 , VAL A:353 , LEU A:354 , HEM A:402binding site for residue 3SQ A 401
2AC2SOFTWAREMET A:68 , LEU A:69 , HIS A:76 , ARG A:80 , PHE A:87 , LEU A:205 , LEU A:206 , GLY A:210 , THR A:213 , THR A:214 , LEU A:217 , THR A:257 , ARG A:259 , SER A:309 , PHE A:310 , GLY A:311 , ILE A:314 , HIS A:315 , CYS A:317 , GLY A:319 , ALA A:323 , 3SQ A:401 , HOH A:595 , HOH A:598 , HOH A:706binding site for residue HEM A 402
3AC3SOFTWAREMET B:68 , LEU B:69 , HIS B:76 , ARG B:80 , PHE B:87 , LEU B:205 , LEU B:206 , GLY B:210 , THR B:213 , THR B:214 , LEU B:217 , THR B:257 , ARG B:259 , SER B:309 , PHE B:310 , GLY B:311 , ILE B:314 , HIS B:315 , CYS B:317 , GLY B:319 , ALA B:323 , 3SQ B:402 , HOH B:604 , HOH B:614 , HOH B:724binding site for residue HEM B 401
4AC4SOFTWAREALA B:152 , LEU B:155 , GLY B:156 , ALA B:209 , VAL B:353 , LEU B:354 , HEM B:401binding site for residue 3SQ B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WPD)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Pro A:73 -Pro A:74
2Asn A:303 -Pro A:304
3Pro B:73 -Pro B:74
4Asn B:303 -Pro B:304

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WPD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WPD)

(-) Exons   (0, 0)

(no "Exon" information available for 4WPD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhh.eee....eee.hhhhhhhhhhh...ee....hhhhhhhhhhh......hhhhhhhhhh..hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh......eehhhhh.hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhh.....eeeee...eee..eee....eeeehhhhhh................................hhhhhhhhhhhhhhhhhhhheeeeeeeeee........eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wpd A   1 MYDWFSEMRKKDPVYYDGNIWQVFSYRYTKEVLNNFSKFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLTSDPPLHDELRSMSADIFSPQKLQTLETFIRETTRSLLDSIDPREDDIVKKLAVPLPIIVISKILGLPIEDKEKFKEWSDLVAFRLGKPGEIFELGKKYLELIGYVKDHLNSGTEVVSRVVNSNLSDIEKLGYIILLLIAGNETTTNLISNSVIDFTRFNLWQRIREENLYLKAIEEALRYSPPVMRTVRKTKERVKLGDQTIEEGEYVRVWIASANRDEEVFHDGEKFIPDRNPNPHLSFGSGIHLCLGAPLARLEARIAIEEFSKRFRHIEILDTEKVPNEVLNGYKRLVVRLKSN 367
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       


Chain B from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhh.eee....eee.hhhhhhhhhhh...ee....hhhhhhhhhhh......hhhhhhhhhh..hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.....eehhhhh.hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhh...hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhh.....eeeee...eee..eee....eeeehhhhhh................................hhhhhhhhhhhhhhhhhhheeeeeeeeeee........eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wpd B   1 MYDWFSEMRKKDPVYYDGNIWQVFSYRYTKEVLNNFSKFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLTSDPPLHDELRSMSADIFSPQKLQTLETFIRETTRSLLDSIDPREDDIVKKLAVPLPIIVISKILGLPIEDKEKFKEWSDLVAFRLGKPGEIFELGKKYLELIGYVKDHLNSGTEVVSRVVNSNLSDIEKLGYIILLLIAGNETTTNLISNSVIDFTRFNLWQRIREENLYLKAIEEALRYSPPVMRTVRKTKERVKLGDQTIEEGEYVRVWIASANRDEEVFHDGEKFIPDRNPNPHLSFGSGIHLCLGAPLARLEARIAIEEFSKRFRHIEILDTEKVPNEVLNGYKRLVVRLKSN 367
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WPD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WPD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WPD)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  4wpd
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  CP119_SULAC | Q55080
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CP119_SULAC | Q55080: 1f4t 1f4u 1io7 1io8 1io9 4tt5 4tuv 4wqj 5bv5

(-) Related Entries Specified in the PDB File

4tt5 THE SAME PROTEIN COMPLEXED WITH 4-(4-BROMOPHENYL)-1H-IMIDAZOLE
4tuv THE SAME PROTEIN COMPLEXED WITH 4-(4-CHLOROPHENYL)-1H-IMIDAZOLE