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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN KYNURENINE AMINOTRANSFERASE-I WITH A C-TERMINAL V5-HEXAHISTIDINE TAG
 
Authors :  N. A. Nadvi, N. K. Salam, J. Park, F. N. Akladios, V. Kapoor, C. A. Collyer M. D. Gorrell, W. B. Church
Date :  17 Oct 14  (Deposition) - 19 Nov 14  (Release) - 03 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Plp Dependent Pyridoxal Phosphate Transaminase Aminotransferase Cofactor Lysine Modification Alpha Beta Protein, Lyase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. A. Nadvi, N. K. Salam, J. Park, F. N. Akladios, V. Kapoor, C. A. Collyer, M. D. Gorrell, W. B. Church
Crystal Structure Of Human Kynurenine Aminotransferase-I In A Novel Space Group
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - KYNURENINE--OXOGLUTARATE TRANSAMINASE 1
    Chains: A, B, C, D
    EC Number: 2.6.1.7, 4.4.1.13, 2.6.1.64
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Plasmid: PENTR/SD/D-TOPO
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Gene: CCBL1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CYSTEINE-S-CONJUGATE BETA-LYASE,GLUTAMINE TRANSAMINASE K, GTK,GLUTAMINE--PHENYLPYRUVATE TRANSAMINASE,KYNURENINE AMINOTRANSFERASE I,KATI,KYNURENINE--OXOGLUTARATE TRANSAMINASE I

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1LLP4Mod. Amino Acid(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC ACID
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1LLP2Mod. Amino Acid(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC ACID
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1LLP2Mod. Amino Acid(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC ACID

(-) Sites  (0, 0)

(no "Site" information available for 4WP0)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WP0)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Glu A:122 -Pro A:123
2Thr A:182 -Pro A:183
3Asn A:185 -Pro A:186
4Glu B:122 -Pro B:123
5Thr B:182 -Pro B:183
6Asn B:185 -Pro B:186
7Glu C:122 -Pro C:123
8Thr C:182 -Pro C:183
9Asn C:185 -Pro C:186
10Glu D:122 -Pro D:123
11Thr D:182 -Pro D:183
12Asn D:185 -Pro D:186

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WP0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WP0)

(-) Exons   (0, 0)

(no "Exon" information available for 4WP0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:416
                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh....hhhhhhhhhhhhh..ee..........hhhhhhhhhhhhh.hhhhhh......hhhhhhhhhhhhhhhhh........eeeehhhhhhhhhhhhhhh....eeeeee....hhhhhhhhh..eeeeee.....ee.hhh..hhhhhhhhh...eeeeeee..........hhhhhhhhhhhhhhh..eeeee..............hhhhh......eeeeeehhhhh.hhhhh.eeee.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...eeee.....eeeeehhhhhhhh.........hhhhhhhhhhhhhhhee.ee.hhhh.hhhhhh...eeeee...hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wp0 A   4 QLQARRLDGIDYNPWVEFVKLASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGLGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGkTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWKVELENL 425
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143   ||  159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419      
                                                                                                                                                                         147|                                                                                          247-LLP                                                                                                                                                                              
                                                                                                                                                                          154                                                                                                                                                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:413
                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.....hhhhhhhhhhhh..ee..........hhhhhhhhhhhhh.hhhhhh......hhhhhhhhhhhhhhhhh........eeeehhhhhhhhhhhhhhh....eeeeee....hhhhhhhhh..eeeeee.......ee.hhh..hhhhhhhhh...eeeeeee..........hhhhhhhhhhhhhhh..eeeee..............hhhhh......eeeeeehhhhh.hhhhh.eeee.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...eeee.....eeeeehhhhhhhh.....hhhhhhhhhhhhhhhee.ee.hhhh.hhhhhh...eeeee...hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wp0 B   4 QLQARRLDGIDYNPWVEFVKLASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGkTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWKVELEN 424
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143   ||  157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       361       371       381       391       401       411       421   
                                                                                                                                                                         147|                                                                                            247-LLP                                                                                                     355|                                                                
                                                                                                                                                                          152                                                                                                                                                                                                         360                                                                


Chain C from PDB  Type:PROTEIN  Length:415
                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhh..ee..........hhhhhhhhhhhhh.hhhhhh......hhhhhhhhhhhhhhhhh........eeeehhhhhhhhhhhhhhh....eeeeee....hhhhhhhhh..eeeeee.......ee.hhh..hhhhhhhhh...eeeeeee..........hhhhhhhhhhhhhhh..eeeee..............hhhhh......eeeeeehhhhhhhhhhh.eeee.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...eeee.....eeeeehhhhhhhh.........hhhhhhhhhhhhhhhee.ee.hhhh.hhhhhh...eeeee...hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wp0 C   4 QLQARRLDGIDYNPWVEFVKLASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPILGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGkTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWKVEL 422
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143     ||157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417     
                                                                                                                                                                           149|                                                                                          247-LLP                                                                                                                                                                           
                                                                                                                                                                            154                                                                                                                                                                                                                                                                            


Chain D from PDB  Type:PROTEIN  Length:416
                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.....hhhhhhhhhhhh..ee..........hhhhhhhhhhhhh.hhhhhh......hhhhhhhhhhhhhhhhh........eeeehhhhhhhhhhhhhhh....eeeeee....hhhhhhhhh..eeeeee......ee.hhh..hhhhhhhhh...eeeeeee..........hhhhhhhhhhhhhhh..eeeee..............hhhhh......eeeeeehhhhh.hhhhh.eeee.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...eeee.....eeeeehhhhhhhh.........hhhhhhhhhhhhhhhee.ee.hhhh.hhhhhh...eeeee...hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wp0 D   4 QLQARRLDGIDYNPWVEFVKLASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGkTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWKVELEN 424
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143   ||  158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418      
                                                                                                                                                                         147|                                                                                           247-LLP                                                                                                                                                                             
                                                                                                                                                                          153
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WP0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WP0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WP0)

(-) Gene Ontology  (22, 22)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KAT1_HUMAN | Q16773: 1w7l 1w7m 1w7n 3fvs 3fvu 3fvx 4wlh 4wlj

(-) Related Entries Specified in the PDB File

4wlh SAME PROTEIN WITH ADDITIONAL 50 RESIDUES ON THE C-TERMINUS CONTAINING A TEV PROTEASE CLEAVAGE SITE FOLLOWED BY LINKER RESIDUES AND A V5-HEXAHISTIDINE TAG.
4wlj SAME PROTEIN WITH ADDITIONAL 50 RESIDUES ON THE C-TERMINUS CONTAINING A TEV PROTEASE CLEAVAGE SITE FOLLOWED BY LINKER RESIDUES AND A V5-HEXAHISTIDINE TAG.