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(-) Description

Title :  THE DUPLICATED TAUROCYAMINE KINASE FROM SCHISTOSOMA MANSONI WITH BOUND TRANSITION STATE ANALOG (TSA) COMPONENTS
 
Authors :  R. Merceron, A. Awama, R. Montserret, O. Marcillat, P. Gouet
Date :  15 Oct 14  (Deposition) - 15 Apr 15  (Release) - 27 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transferase, Duplicated, Substrate Specificity, Transition State (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Merceron, A. M. Awama, R. Montserret, O. Marcillat, P. Gouet
The Substrate-Free And -Bound Crystal Structures Of The Duplicated Taurocyamine Kinase From The Human Parasite Schistosoma Mansoni.
J. Biol. Chem. V. 290 12951 2015
PubMed-ID: 25837252  |  Reference-DOI: 10.1074/JBC.M114.628909

(-) Compounds

Molecule 1 - TAUROCYAMINE KINASE
    Chains: A, B
    EC Number: 2.7.3.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 31-746
    Gene: SMP_194770
    Mutation: YES
    Organism Common: BLOOD FLUKE
    Organism Scientific: SCHISTOSOMA MANSONI
    Organism Taxid: 6183

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 13)

Asymmetric Unit (4, 13)
No.NameCountTypeFull Name
13S54Ligand/IonTAUROCYAMINE
2ADP4Ligand/IonADENOSINE-5'-DIPHOSPHATE
3MG3Ligand/IonMAGNESIUM ION
4NO32Ligand/IonNITRATE ION
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
13S52Ligand/IonTAUROCYAMINE
2ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION
4NO32Ligand/IonNITRATE ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
13S52Ligand/IonTAUROCYAMINE
2ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION
4NO3-1Ligand/IonNITRATE ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:119 , ARG A:121 , ARG A:123 , HIS A:182 , MET A:230 , ARG A:277 , SER A:279 , VAL A:280 , HIS A:281 , ARG A:305 , GLU A:310 , ASP A:320 , MG A:806 , NO3 A:807binding site for residue ADP A 801
02AC2SOFTWARESER A:482 , ARG A:484 , ARG A:486 , HIS A:545 , TRP A:581 , ARG A:589 , ARG A:640 , SER A:642 , VAL A:643 , LEU A:644 , ARG A:669 , LEU A:671 , TYR A:672 , GLY A:673 , GLU A:674 , ASP A:684 , MG A:805 , NO3 A:808 , HOH A:1105binding site for residue ADP A 802
03AC3SOFTWAREALA A:59 , LEU A:60 , LEU A:61 , ARG A:63 , GLU A:222 , CYS A:268 , SER A:270 , ASN A:271 , NO3 A:807binding site for residue 3S5 A 803
04AC4SOFTWARESER A:422 , ILE A:423 , CYS A:424 , ARG A:426 , GLU A:585 , CYS A:631 , GLU A:674 , HIS A:675 , NO3 A:808binding site for residue 3S5 A 804
05AC5SOFTWAREGLU A:584 , ADP A:802 , NO3 A:808 , HOH A:1209binding site for residue MG A 805
06AC6SOFTWAREGLU A:222 , ADP A:801 , NO3 A:807binding site for residue MG A 806
07AC7SOFTWAREARG A:123 , GLU A:222 , ASN A:271 , ARG A:305 , ADP A:801 , 3S5 A:803 , MG A:806 , HOH A:1173binding site for residue NO3 A 807
08AC8SOFTWAREARG A:486 , GLU A:585 , ARG A:589 , ASN A:634 , ARG A:669 , GLU A:674 , ADP A:802 , 3S5 A:804 , MG A:805 , HOH A:1247binding site for residue NO3 A 808
09AC9SOFTWARESER B:119 , ARG B:121 , ARG B:123 , ARG B:277 , SER B:279 , VAL B:280 , HIS B:281 , ARG B:305 , ASP B:320 , MG B:805 , HOH B:1222 , HOH B:1267binding site for residue ADP B 801
10AD1SOFTWARESER B:482 , ARG B:484 , ARG B:486 , ARG B:589 , ARG B:640 , SER B:642 , VAL B:643 , LEU B:644 , ARG B:669 , ASP B:684 , HOH B:1002 , HOH B:1203 , HOH B:1274binding site for residue ADP B 802
11AD2SOFTWAREALA B:59 , LEU B:60 , LEU B:61 , ARG B:63 , SER B:270 , HOH B:1273binding site for residue 3S5 B 803
12AD3SOFTWARESER B:422 , ILE B:423 , CYS B:424 , ARG B:426 , GLU B:585 , CYS B:631 , SER B:633binding site for residue 3S5 B 804
13AD4SOFTWAREGLU B:222 , ADP B:801 , HOH B:1267binding site for residue MG B 805

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WOE)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Trp A:201 -Pro A:202
2Trp A:564 -Pro A:565
3Pro A:648 -Lys A:649
4Trp B:201 -Pro B:202
5Trp B:564 -Pro B:565

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WOE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WOE)

(-) Exons   (0, 0)

(no "Exon" information available for 4WOE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:716
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh....hhhhhhhhhhhhhhhh........hhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh.hhhhh.........hhhhh...hhhhh...eeeeeeeeee...........hhhhhhhhhhhhhhhhhh.hhhh.eeeee....hhhhhhhhhhh.......hhhhhhh..........eeeee....eeeee.....eeeeeeee..hhhhhhhhhhhhhhhhh......ee...ee...hhhhh....eeeeeeehhhhhhh.hhhhhhhhh.eeee............eeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhh....hhhhhh.hhhhhhhhh........hhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhh..............................eeeeeeeeee...........hhhhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhhhhhhhhhhh.......hhhhhhh..........eeeee....eeeee.....eeeeeeee..hhhhhhhhhhhhhhhhhh.....ee...ee...hhhhh...eeeeeeee..hhhhhhhhhhhhhhh..eeee........hhh.eeeeee......hhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4woe A   1 MQVESLQNLQVKIRNDERNHSLTKKYLTDDIVKKYQATKTSLGGTLAQCVNTNAYNPGALLPRSCDLNAYETFRDFFDAVIADYHKVPDGKIQHPKSNFGDLKSLSFTDLNTYGNLVVSTRVRLGRTVEGFGFGPTLTKETRIELENKISTALHNLSGEYEGTYYPLTGMSEEDRIKLVNDHFLFRNDDNVLRDAGGYIDWPTGRGIFINKQKNFLVWINEEDHIRVISMQKGGGLTAVYKRLADAIQELSKSLKFAFNDRLGFITFCPSNLGTTLRASVHAKIPMLASLPNFKEICEKHGIQPRGTHGEHTESVGGIYDLSNKRRLGLTELDAVTEMHSGVRALLELEVMLQEYNKGAPEGVMPVEPLTYLAKLLEGASIEKCYTRKYLTPEIIKKYDGKRTTHGATLAHMIRNGAYNNRSICPRTGEAECYSTFIDYLDPLICDYHGVKDSAFKHPAPTFGDLSKLPFGDLDPTGKFIVSTRVRVGRSVEGFLFPTIMSKTDRIKLEQVISGALKGLTGEHAGTYYPLTDMKEEDRKQLVEDHFLFKNDDPVLRDAGGYRDWPVGRGIFHNNSKTFLVWVCEEDHMRIISMQQGGNLAAVYKRLIEGINAIGKSMKFAHSDKYGYITCCPSNLGTSMRASVLLKIPKLSSQPKKLDEICAKYMLQARGLYGEHTESPDGTYDISNKRRLGLTELQAAHEMAEGVAKMIEIEKGL 716
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Chain B from PDB  Type:PROTEIN  Length:698
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh....hhhhhhhhhhhhhhhh........hhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh.......................hhhhh...eeeeeeeeee...........hhhhhhhhhhhhhhhhhh.hhhh.eeeee....hhhhhhhhhhh.......hhhhhh...........eeeee....eeeee.....eeeeeeee..hhhhhhhhhhhhhhhhh......ee...ee...hhhhh....eeeeeeehhhhhhh.hhhhhhhhh.eeee....eeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhh......hhhhhh.hhhhhhhhh........hhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhh..............................eeeeeeeeee...........hhhhhhhhhhhhhhhhhh.hhhh.eeeee....hhhhhhhhhhh.......hhhhhhh..........eeeee....eeeee.....eeeeeeee..hhhhhhhhhhhhhhhhhh.....ee...ee...hhhhh...eeeeeeee..........hhhhhhhh.eeee..eeeeee......hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4woe B   1 MQVESLQNLQVKIRNDERNHSLTKKYLTDDIVKKYQATKTSLGGTLAQCVNTNAYNPGALLPRSCDLNAYETFRDFFDAVIADYHKVPDGKIQHPKSNFGDLKSLSFTDLNTYGNLVVSTRVRLGRTVEGFGFGPTLTKETRIELENKISTALHNLSGEYEGTYYPLTGMSEEDRIKLVNDHFLFRNDDNVLRDAGGYIDWPTGRGIFINKQKNFLVWINEEDHIRVISMQKGGGLTAVYKRLADAIQELSKSLKFAFNDRLGFITFCPSNLGTTLRASVHAKIPMLASLPNFKEICEKHGIQPRGTGGIYDLSNKRRLGLTELDAVTEMHSGVRALLELEVMLQEYNKGAPEGVMPVEPLTYLAKLLEGASIEKCYTRKYLTPEIIKKYDGKRTTHGATLAHMIRNGAYNNRSICPRTGEAECYSTFIDYLDPLICDYHGVKDSAFKHPAPTFGDLSKLPFGDLDPTGKFIVSTRVRVGRSVEGFLFPTIMSKTDRIKLEQVISGALKGLTGEHAGTYYPLTDMKEEDRKQLVEDHFLFKNDDPVLRDAGGYRDWPVGRGIFHNNSKTFLVWVCEEDHMRIISMQQGGNLAAVYKRLIEGINAIGKSMKFAHSDKYGYITCCPSNLGTSMRASVLLKIPKLSSQPKKLDEICAKYMLQARGGTYDISNKRRLGLTELQAAHEMAEGVAKMIEIEKGL 716
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300      |318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668 ||    688       698       708        
                                                                                                                                                                                                                                                                                                                                            307|                                                                                                                                                                                                                                                                                                                                                               670|                                   
                                                                                                                                                                                                                                                                                                                                             316                                                                                                                                                                                                                                                                                                                                                                681
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WOE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WOE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WOE)

(-) Gene Ontology  (11, 11)

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        KTRC_SCHMA | P16641: 4wo8 4wod

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