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(-) Description

Title :  CRYSTAL STRUCTURE OF PYROCOCCUS FURIOSUS CMR4 (CAS7)
 
Authors :  X. Zhu, K. Ye
Date :  15 Oct 14  (Deposition) - 14 Jan 15  (Release) - 04 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Nuclease, Ramp Domain, Crispr-Cas System, Cmr Cmplex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Zhu, K. Ye
Cmr4 Is The Slicer In The Rna-Targeting Cmr Crispr Complex
Nucleic Acids Res. V. 43 1257 2015
PubMed-ID: 25541196  |  Reference-DOI: 10.1093/NAR/GKU1355

(-) Compounds

Molecule 1 - CRISPR SYSTEM CMR SUBUNIT CMR4
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CMR4
    Organism Scientific: PYROCOCCUS FURIOSUS DSM 3638
    Organism Taxid: 186497
    Synonym: CRISPR TYPE III-B/RAMP MODULE RAMP PROTEIN CMR4

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4WNZ)

(-) Sites  (0, 0)

(no "Site" information available for 4WNZ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WNZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WNZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WNZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WNZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4WNZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:237
                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee...................hhhhhhhhhhhhhhhh...hhhhhhhhh...eee...eeeeeeee.....eeeeehhhhhhhhhhhhhhh..........eeee........eeee..eeeee.....hhhhhhhhhhhhhhhhhhhhhhh..eee.hhhhhhhhhhh.........eeeeeeee....hhhhhhhhhhhhhh....eee..........eeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wnz A   2 KAYLVGLYTLTPTHPPIQRERHTGFPVIWGQSLKGVLRSYLKLVEKVDEEKINKIFGGLISVGDAKILFFPVRSLKGVYAYVTSPLVLNRFKRDLELAGVTEIPELTDTAIASEEITVDNKVILEEFAILIQKDDKGILESVVKAIEQAFGNEMAEKIKGRIAIIPDDVFRDLVELSTEYIPSDTLFYSLILVTPRAKDNDMALIKEVLGKINGKYLQIGGNETVGKGFVKVTLKEV 286
                                    11    ||  32        42        52        62      ||82        92       102       112       122|      136       146       156       166       176       186       196       229       239       249       259       269       279       
                                         16|                                       69|                                       122|                                                                          204|                                                          
                                          28                                        80                                        127                                                                           228                                                          


Chain B from PDB  Type:PROTEIN  Length:237
                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee...................hhhhhhhhhhhhhhhh...hhhhhhhhh...eee...eeeeeeee.....eeeeehhhhhhhhhhhhhhh..........eeee........eeee..eeeee.....hhhhhhhhhhhhhhhhhhhhhhh..eee.hhhhhhhhhhh.........eeeeeeee....hhhhhhhhhhhhhh...eeee..........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wnz B   2 KAYLVGLYTLTPTHPPIQRERHTGFPVIWGQSLKGVLRSYLKLVEKVDEEKINKIFGGLISVGDAKILFFPVRSLKGVYAYVTSPLVLNRFKRDLELAGVTEIPELTDTAIASEEITVDNKVILEEFAILIQKDDKGILESVVKAIEQAFGNEMAEKIKGRIAIIPDDVFRDLVELSTEYIPSDTLFYSLILVTPRAKDNDMALIKEVLGKINGKYLQIGGNETVGKGFVKVTLKEV 286
                                    11    ||  32        42        52        62      ||82        92       102       112       122|      136       146       156       166       176       186       196       229       239       249       259       269       279       
                                         16|                                       69|                                       122|                                                                          204|                                                          
                                          28                                        80                                        127                                                                           228
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WNZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WNZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WNZ)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CMR4_PYRFU | Q8U1S9: 4rdp 4w8w

(-) Related Entries Specified in the PDB File

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