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(-) Description

Title :  CRYSTAL STRUCTURE OF MTB PEPCK IN COMPLEX WITH NON-HYDROLYZABLE ANALOG OF GTP
 
Authors :  H. L. Kim, J. C. Sacchettini
Date :  06 Oct 14  (Deposition) - 21 Oct 15  (Release) - 21 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.61
Chains :  Asym./Biol. Unit :  A
Keywords :  Gtp-Dependent Pepck, P-Loop, R-Loop, Omega-Loop, Rate-Limiting Gluconeogenic Enzyme, Kinase, Phosphoryl Transfer, Metal Binding, Lyase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. L. Kim
Crystal Structure Of Mtb Pepck In Complex With Non-Hydrolyzable Analog Of Gtp
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PHOSPHOENOLPYRUVATE CARBOXYKINASE [GTP]
    Chains: A
    EC Number: 4.1.1.32
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PCKG, MRA_0219
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 419947
    Strain: ATCC 25177 / H37RA
    Synonym: PEPCK

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1GNP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2GOL1Ligand/IonGLYCEROL
3MN1Ligand/IonMANGANESE (II) ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:270 , SER A:271 , ALA A:272 , CYS A:273 , GLY A:274 , LYS A:275 , THR A:276 , ASN A:277 , ASP A:362 , ARG A:377 , ARG A:420 , TRP A:501 , PHE A:502 , PHE A:510 , GLY A:514 , PHE A:515 , ASN A:518 , MN A:703 , HOH A:801 , HOH A:810 , HOH A:852 , HOH A:882 , HOH A:897 , HOH A:1003 , HOH A:1072 , HOH A:1423binding site for residue GNP A 701
2AC2SOFTWARETHR A:86 , THR A:99 , ASN A:100 , ASN A:101 , ARG A:234 , LEU A:467 , PRO A:468 , HOH A:1394binding site for residue GOL A 702
3AC3SOFTWARETHR A:276 , GNP A:701 , HOH A:801 , HOH A:810 , HOH A:1383 , HOH A:1400binding site for residue MN A 703

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WL8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WL8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WL8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WL8)

(-) Exons   (0, 0)

(no "Exon" information available for 4WL8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:599
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.........hhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh..eee.........eee..hhhhh..hhh.eee...hhhhh.......hhhhhhhhhhhhhh......eeeeeeeee........eeeeeee.hhhhhhhhhhhheehhhhhhhh......eeeeee....................eeeee....eeeee...hhhhhh.......hhhhhhhhhhhh.eee..eeeeee.....eeeeeee.....hhhhhhh........eeeeee...eeeee.....eeee....eeeee........hhhhhhhhhh...eee..ee.....ee.........eee.....eee.............eeeee.hhh...hhhhhh...eeeeeeeee.........eee..hhhhhhhhhhh.ee....ee.hhhh......hhhhhhhhhhhhhhh.hhhhh.eeeee..............hhhhhhhhhhhhhhhhh.....eee..eee.hhhhh.......hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wl8 A  -1 SHMTSATIPGLDTAPTNHQGLLSWVEEVAELTQPDRVVFTDGSEEEFQRLCDQLVEAGTFIRLNPEKHKNSYLALSDPSDVARVESRTYICSAKEIDAGPTNNWMDPGEMRSIMKDLYRGCMRGRTMYVVPFCMGPLGAEDPKLGVEITDSEYVVVSMRTMTRMGKAALEKMGDDGFFVKALHSVGAPLEPGQKDVAWPCSETKYITHFPETREIWSYGSGYGGNALLGKKCYSLRIASAMAHDEGWLAEHMLILKLISPENKAYYFAAAFPSACGKTNLAMLQPTIPGWRAETLGDDIAWMRFGKDGRLYAVNPEFGFFGVAPGTNWKSNPNAMRTIAAGNTVFTNVALTDDGDVWWEGLEGDPQHLIDWKGNDWYFRETETNAAHPNSRYCTPMSQCPILAPEWDDPQGVPISGILFGGRRKTTVPLVTEARDWQHGVFIGATLGSEQNVRRDPMAMLPFLGYNVGDYFQHWINLGKHADESKLPKVFFVNWFRRGDDGRFLWPGFGENSRVLKWIVDRIEHKAGGATTPIGTVPAVEDLDLDGLDVDAADVAAALAVDADEWRQELPLIEEWLQFVGEKLPTGVKDEFDALKERLG 606
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448|      467       477       487       497       507       517       527       537       547       557       567       577       587       597         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           448|                                                                                                                                                    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            458
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WL8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WL8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WL8)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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  PCKG_MYCTA | A5TYT6
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  4.1.1.32
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PCKG_MYCTA | A5TYT6: 4wie 4wiu 4wou 4wpt 4wpu 4wpv 5i67

(-) Related Entries Specified in the PDB File

4wie 4wiu