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(-) Description

Title :  DIX DOMAIN OF HUMAN DVL2
 
Authors :  M. Fiedler, M. Bienz, J. Madrzak, J. W. Chin
Date :  26 Sep 14  (Deposition) - 13 May 15  (Release) - 13 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.69
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Polymer Signaling Ubiquitin-Like, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Madrzak, M. Fiedler, C. M. Johnson, R. Ewan, A. Knebel, M. Bienz, J. W. Chin
Ubiquitination Of The Dishevelled Dix Domain Blocks Its Head-To-Tail Polymerization.
Nat Commun V. 6 6718 2015
PubMed-ID: 25907794  |  Reference-DOI: 10.1038/NCOMMS7718

(-) Compounds

Molecule 1 - SEGMENT POLARITY PROTEIN DISHEVELLED HOMOLOG DVL-2
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PETM-11
    Expression System Strain: CODONPLUS-RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 13-105
    Gene: DVL2
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DISHEVELLED-2,DSH HOMOLOG 2

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
11PE3Ligand/IonPENTAETHYLENE GLYCOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:58 , PHE A:81 , ARG A:84 , VAL A:86 , PHE C:64binding site for residue 1PE A 201
2AC2SOFTWARELYS B:58 , PHE B:81 , ARG B:84 , VAL B:86binding site for residue 1PE B 201
3AC3SOFTWARELYS C:58 , PHE C:81 , ARG C:84 , VAL C:86binding site for residue 1PE C 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WIP)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala A:51 -Gly A:52

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WIP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WIP)

(-) Exons   (0, 0)

(no "Exon" information available for 4WIP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:81
                                                                                                                
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee......eeeee.......hhhhhhhhhh.....eeeeeeee...eeeeeee............eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                  4wip A 11 MGETKVIYHLDEEETPDLVKIPVPAERITLGDFKSVLQRPAGAKYFFKSMDQDFGVVKEEISDDNARLPCFNGRVVSWLVS 91
                                    20        30        40        50        60        70        80        90 


Chain B from PDB  Type:PROTEIN  Length:81
                                                                                                                
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee......eeeee.......hhhhhhhhhh.....eeeeeeee...eeeeee.............eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                  4wip B 11 MGETKVIYHLDEEETPDLVKIPVPAERITLGDFKSVLQRPAGAKYFFKSMDQDFGVVKEEISDDNARLPCFNGRVVSWLVS 91
                                    20        30        40        50        60        70        80        90 


Chain C from PDB  Type:PROTEIN  Length:81
                                                                                                                
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee......eeeee.......hhhhhhhhhh.....eeeeeeee...eeeeeee............eeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                  4wip C 12 GETKVIYHLDEEETPDLVKIPVPAERITLGDFKSVLQRPAGAKYFFKSMDQDFGVVKEEISDDNARLPCFNGRVVSWLVSS 92
                                    21        31        41        51        61        71        81        91
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WIP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WIP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WIP)

(-) Gene Ontology  (47, 47)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:51 - Gly A:52   [ RasMol ]  
 

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  DVL2_HUMAN | O14641
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DVL2_HUMAN | O14641: 2rey 3cbx 3cby 3cbz 3cc0 5lnp 5suy 5suz

(-) Related Entries Specified in the PDB File

3pz8 3PZ8 CONTAINS THE DIX DOMAIN OF DVL-1.