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(-) Description

Title :  HUMAN SPLICING FACTOR, CONSTRUCT 2
 
Authors :  M. Lee, C. S. Bond
Date :  26 Sep 14  (Deposition) - 01 Apr 15  (Release) - 29 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Rrm, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Lee, A. Sadowska, I. Bekere, D. Ho, B. S. Gully, Y. Lu, K. S. Iyer, J. Trewhella, A. H. Fox, C. S. Bond
The Structure Of Human Sfpq Reveals A Coiled-Coil Mediated Polymer Essential For Functional Aggregation In Gene Regulation.
Nucleic Acids Res. V. 43 3826 2015
PubMed-ID: 25765647  |  Reference-DOI: 10.1093/NAR/GKV156

(-) Compounds

Molecule 1 - SPLICING FACTOR, PROLINE- AND GLUTAMINE-RICH
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 369-598
    Gene: SFPQ, PSF
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 100 KDA DNA-PAIRING PROTEIN,HPOMP100,DNA-BINDING P52/P100 COMPLEX,100 KDA SUBUNIT,POLYPYRIMIDINE TRACT-BINDING PROTEIN- ASSOCIATED-SPLICING FACTOR,PTB-ASSOCIATED-SPLICING FACTOR

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4WIK)

(-) Sites  (0, 0)

(no "Site" information available for 4WIK)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WIK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WIK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WIK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WIK)

(-) Exons   (0, 0)

(no "Exon" information available for 4WIK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee......hhhhhhhhhh....eeeeeeeee....eeeeeeeee.hhhhhhhhhhhhhhh.ee........eeee...ee.....hhhhhhh.hhhhhhh....ee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4wik A 370 AAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESY 597
                                   379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589        


Chain B from PDB  Type:PROTEIN  Length:225
                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee......hhhhhhhhhh....eeeeeeeee....eeeeeeeee.hhhhhhhhhhhhhhh.ee........eeee...ee...............hhhhhh...ee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wik B 370 AAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQRE 594
                                   379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WIK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WIK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WIK)

(-) Gene Ontology  (37, 37)

Asymmetric/Biological Unit(hide GO term definitions)

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  SFPQ_HUMAN | P23246
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SFPQ_HUMAN | P23246: 4wii 4wij

(-) Related Entries Specified in the PDB File

4wii 4wij