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(-) Description

Title :  CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA PBP3 WITH SMC-3176
 
Authors :  A. D. Ferguson
Date :  10 Sep 14  (Deposition) - 22 Apr 15  (Release) - 10 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.99
Chains :  Asym./Biol. Unit :  A
Keywords :  Inhibitor, Siderophore-Conjugated Monocarbams, Pseudomonas Aeruginosa, Penicillin-Binding Protein 3 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. E. Murphy-Benenato, B. Dangel, H. E. Davis, T. F. Durand-Reville, A. D. Ferguson, N. Gao, H. Jahic, J. P. Mueller, E. L. Manyak, O. Quiroga M. Rooney, L. Sha, M. Sylvester, F. Wu, M. Zambrowski, S. X. Zhao
Sar And Structural Analysis Of Siderophore-Conjugated Monocarbam Inhibitors Of Pseudomonas Aeruginosa Pbp3.
Acs Med. Chem. Lett. V. 6 537 2015
PubMed-ID: 26005529  |  Reference-DOI: 10.1021/ACSMEDCHEMLETT.5B00026

(-) Compounds

Molecule 1 - PENICILLIN-BINDING PROTEIN 3
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CIA_00399
    Organism Scientific: PSEUDOMONAS AERUGINOSA PA14
    Organism Taxid: 652611

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
13LE1Ligand/Ion(3S,4S,7Z)-7-(2-AMINO-1,3-THIAZOL-4-YL)-4-FORMYL-1-[({3-(5-HYDROXY-4-OXO-3,4-DIHYDROPYRIDIN-2-YL)-4-[3-(METHYLSULFONYL)PROPYL]-5-OXO-4,5-DIHYDRO-1H-1,2,4-TRIAZOL-1-YL}SULFONYL)AMINO]-3,10,10-TRIMETHYL-1,6-DIOXO-9-OXA-2,5,8-TRIAZAUNDEC-7-EN-11-OIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:291 , SER A:294 , VAL A:333 , SER A:334 , SER A:349 , ASN A:351 , GLY A:470 , VAL A:471 , ARG A:473 , LYS A:484 , SER A:485 , GLY A:486 , THR A:487 , ALA A:488 , ARG A:489 , PHE A:533 , GLY A:534 , GLY A:535 , HOH A:714 , HOH A:717 , HOH A:783 , HOH A:787 , HOH A:789 , HOH A:824 , HOH A:842 , HOH A:865binding site for residue 3LE A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WEL)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Gln A:265 -Pro A:266
2Tyr A:319 -Pro A:320
3Ala A:511 -Pro A:512

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WEL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WEL)

(-) Exons   (0, 0)

(no "Exon" information available for 4WEL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:500
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee......ee.....eeeeeeeeeeeeehhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.....eeeeeeehhhhhhhhhh.....eeeeeeeeee..hhhhhhhhhh.........hhhhhhhhhhhhh..eeeeeee.....eeeeeeeee.......ee...hhhhhhhhhhhhhhhhhhhh..eeeeeeee.....eeeeeee............hhhhhhhhhhh...hhhhhhhhhhhhhhhh.......eee....eeee..eeee.......eeehhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh........................hhhhhhhhhh......hhhhhhhhhhhhhh..ee..............ee..hhhhhhhhhhhhhhhhhh...hhhhh......eeeeeeee...eeeeeeeee......eeeeeeee.......hhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wel A  51 RSVRHIAIPAHRGLITDRNGEPLAVSTPVTTLWANPKELMTAKERWPQLAAALGQDTKLFADRIEQNAEREFIYLVRGLTPEQGEGVIALKVPGVYSIEEFRRFYPAGEVVAHAVGFTDVDDRGREGIELAFDEWLAGVPGKRQVLKDRRGRVIKDVQVTKNAKPGKTLALSIDLRLQYLAHRELRNALLENGAKAGSLVIMDVKTGEILAMTNQPTYNPNNRRNLQPAAMRNRAMIDVFEPGSTVKPFSMSAALASGRWKPSDIVDVYPGTLQIGRYTIRDVSRNSRQLDLTGILIKSSNVGISKIAFDIGAESIYSVMQQVGLGQDTGLGFPGERVGNLPNHRKWPKAETATLAYGYGLSVTAIQLAHAYAALANDGKSVPLSMTRVDRVPDGVQVISPEVASTVQGMLQQVVEAQGGVFRAQVPGYHAAGKSGTARKNAYRSLFAGFAPATDPRIAMVVVIDEPSKAGYFGGLVSAPVFSKVMAGALRLMNVPPDNL 560
                                    60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490|      510       520       530       540       550       560
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 490|                                                           
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  501
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WEL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WEL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WEL)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4WEL)

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 Related Entries

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UniProtKB/TrEMBL
        A0A0M3KKZ3_P | A0A0M3KKZ3: 4wej

(-) Related Entries Specified in the PDB File

4wej 4wek