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(-) Description

Title :  CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA PBP3 WITH A R4 SUBSTITUTED VINYL MONOCARBAM
 
Authors :  A. D. Ferguson
Date :  10 Sep 14  (Deposition) - 22 Apr 15  (Release) - 10 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.74
Chains :  Asym./Biol. Unit :  A
Keywords :  Inhibitor, Siderophore-Conjugated Monocarbams, Pseudomonas Aeruginosa, Penicillin-Binding Protein 3, Penicillin-Binding Protein-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. E. Murphy-Benenato, B. Dangel, H. E. Davis, T. F. Durand-Reville, A. D. Ferguson, N. Gao, H. Jahic, J. P. Mueller, E. L. Manyak, O. Quiroga M. Rooney, L. Sha, M. Sylvester, F. Wu, M. Zambrowski, S. X. Zhao
Sar And Structural Analysis Of Siderophore-Conjugated Monocarbam Inhibitors Of Pseudomonas Aeruginosa Pbp3.
Acs Med. Chem. Lett. V. 6 537 2015
PubMed-ID: 26005529  |  Reference-DOI: 10.1021/ACSMEDCHEMLETT.5B00026

(-) Compounds

Molecule 1 - PENICILLIN-BINDING PROTEIN 3
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: FTSI, PABE171_4609
    Mutation: YES
    Organism Scientific: PSEUDOMONAS AERUGINOSA ATCC 14886
    Organism Taxid: 1163392

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
13LC1Ligand/Ion(3S,4S,7Z)-7-(2-AMINO-1,3-THIAZOL-4-YL)-3-ETHENYL-4-FORMYL-1-[({3-(5-HYDROXY-4-OXO-3,4-DIHYDROPYRIDIN-2-YL)-4-[3-(METHYLSULFONYL)PROPYL]-5-OXO-4,5-DIHYDRO-1H-1,2,4-TRIAZOL-1-YL}SULFONYL)AMINO]-10,10-DIMETHYL-1,6-DIOXO-9-OXA-2,5,8-TRIAZAUNDEC-7-EN-11-OIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:535 , SER A:538 , VAL A:577 , SER A:578 , SER A:593 , ASN A:595 , GLY A:652 , TYR A:653 , GLY A:713 , GLY A:714 , VAL A:715 , ARG A:717 , LYS A:728 , SER A:729 , GLY A:730 , THR A:731 , ALA A:732 , ARG A:733 , TYR A:747 , PHE A:777 , GLY A:778 , GLY A:779 , HOH A:1144 , HOH A:1171 , HOH A:1248 , HOH A:1300 , HOH A:1304binding site for residue 3LC A 901

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WEK)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Gln A:509 -Pro A:510
2Asn A:519 -Leu A:520
3Tyr A:563 -Pro A:564
4Ala A:755 -Pro A:756

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WEK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WEK)

(-) Exons   (0, 0)

(no "Exon" information available for 4WEK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:500
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee......ee.....eeeeeeeeeeeeehhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.....eeeeeeehhhhhhhhhh.....eeeeeeeeee..hhhhhhhhhh.........hhhhhhhhhhhhh..eeeeeee.....eeeeeeeee.......ee...hhhhhhhhhhhhhhhhhhhh..eeeeeeee.....eeeeeee...........hhhhhhhhhhhh...hhhhhhhhhhhhhhhh.......eee....eeee..eeee.......eeehhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh........................hhhhhhhhhh......hhhhhhhhhhhhhh..ee..............ee..hhhhhhhhhhhhhhhhhh...hhhhh......eeeeeeee...eeeeeeeee......eeeeeeee.......hhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wek A 295 RSVRHIAIPAHRGLITDRNGEPLAVSTPVTTLWANPKELMTAKERWPQLAAALGQDTKLFADRIEQNAEREFIYLVRGLTPEQGEGVIALKVPGVYSIEEFRRFYPAGEVVAHAVGFTDVDDRGREGIELAFDEWLAGVPGKRQVLKDRRGRVIKDVQVTKNAKPGKTLALSIDLRLQYLAHRELRNALLENGAKAGSLVIMDVKTGEILAMTNQPTYNPNNRRNLQPAAMRNRAMIDVFEPGSTVKPFSMSAALASGRWKPSDIVDVYPGTLQIGRYTIRDVSRNSRQLDLTGILIKSSNVGISKIAFDIGAESIYSVMQQVGLGQDTGLGFPGERVGNLPNHRKWPKAETATLAYGYGLSVTAIQLAHAYAALANDGKSVPLSMTRVDRVPDGVQVISPEVASTVQGMLQQVVEAQGGVFRAQVPGYHAAGKSGTARKNAYRSLFAGFAPATDPRIAMVVVIDEPSKAGYFGGLVSAPVFSKVMAGALRLMNVPPDNL 804
                                   304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734|      754       764       774       784       794       804
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 734|                                                           
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  745
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WEK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WEK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WEK)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  Cis Peptide Bonds
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    Asn A:519 - Leu A:520   [ RasMol ]  
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4wej 4wel