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(-) Description

Title :  CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE, WITH MUTATION Y168A
 
Authors :  M. Myllykoski, A. Raasakka, P. Kursula
Date :  08 Sep 14  (Deposition) - 30 Sep 15  (Release) - 25 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Myelin, Nervous System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Raasakka, M. Myllykoski, S. Laulumaa, M. Lehtimaki, M. Hartlein, M. Moulin, I. Kursula, P. Kursula
Determinants Of Ligand Binding And Catalytic Activity In Th Myelin Enzyme 2', 3'-Cyclic Nucleotide 3'-Phosphodiesterase.
Sci Rep V. 5 16520 2015
PubMed-ID: 26563764  |  Reference-DOI: 10.1038/SREP16520

(-) Compounds

Molecule 1 - 2',3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE
    Chains: A
    EC Number: 3.1.4.37
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PTH27
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA
    Expression System Vector Type: PLASMID
    Fragment: CATALYTIC DOMAIN, RESIDUES 179-398
    Gene: CNP, CNP1
    Mutation: YES
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: CNPASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1ACY1Ligand/IonACETIC ACID
2CL2Ligand/IonCHLORIDE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:289 , LEU A:293 , PRO A:296 , SER A:297 , GLY A:305 , SER A:306 , ARG A:307binding site for residue ACY A 401
2AC2SOFTWAREALA A:260 , HOH A:561binding site for residue CL A 402
3AC3SOFTWARESER A:178 , ARG A:182binding site for residue CL A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WDH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WDH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WDH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WDH)

(-) Exons   (0, 0)

(no "Exon" information available for 4WDH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhh........eeeeee.hhhh..hhhhhhhhhhhhhhh..eeeeeeeeeee...eeeeeee.hhhhhh........hhhhhh.......eeeeee......hhhhhhhhhhhhhh.....eee..eeeeeee..eeeeeeeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wdh A 162 KDFLPLAFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRHFISGDEPKEKLELVSYFGKRPPGVLHCTTKFCDYGKAAGAEEYAQQEVVKRSYGKAFKLSISALFVTPKTAGAQVVLTDQELQLWPSDLDKPSASEGLPPGSRAHVTLGCAADVQPVQTGLDLLDILQQVKGEAVGELPRGKLYSLGKGRWMLSLTKKMEVKAIFTGYYG 378
                                   171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331   ||  345       355       365       375   
                                                                                                                                                                                                       335|                                      
                                                                                                                                                                                                        340
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WDH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WDH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WDH)

(-) Gene Ontology  (33, 33)

Asymmetric/Biological Unit(hide GO term definitions)

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  4wdh
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  CN37_MOUSE | P16330
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  3.1.4.37
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CN37_MOUSE | P16330: 2xmi 2y1p 2y3x 2ydb 2ydc 2ydd 2yoz 2yp0 2ypc 2ype 2yph 2yq9 3zbr 3zbs 3zbz 4wbi 4wbl 4wc9 4wca 4wcb 4wcc 4wda 4wdb 4wdd 4wde 4wdf 4wdg 4wex 4wfr 5ae0

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4WDH)