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(-) Description

Title :  CRYSTAL STRUCTURE OF BMP-2-INDUCIBLE KINASE IN COMPLEX WITH BARICITINIB
 
Authors :  F. J. Sorrell, J. M. Elkins, T. Krojer, E. Williams, P. Savitsky, F. Von C. H. Arrowsmith, A. M. Edwards, C. Bountra, S. Knapp, Structural Gen Consortium (Sgc)
Date :  28 Aug 14  (Deposition) - 10 Sep 14  (Release) - 09 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.14
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase, Small-Molecule, Catalytic Domain, Protein Binding, Inhibitor, Structural Genomics, Structural Genomics Consortium, Sgc, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. J. Sorrell, M. Szklarz, K. R. Abdul Azeez, J. M. Elkins, S. Knapp
Family-Wide Structural Analysis Of Human Numb-Associated Protein Kinases.
Structure V. 24 401 2016
PubMed-ID: 26853940  |  Reference-DOI: 10.1016/J.STR.2015.12.015

(-) Compounds

Molecule 1 - BMP-2-INDUCIBLE PROTEIN KINASE
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PNIC-ZB
    Expression System Taxid: 469008
    Expression System Variant: R3-PRARE2
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 38-345
    Gene: BMP2K, BIKE, HRIHFB2017
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: KINASE DOMAIN WITH TWO SURFACE ENTROPY MUTATIONS (K320A, K321A)
    Synonym: BIKE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
13JW1Ligand/IonBARICITINIB
2EDO2Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:105 , GLU A:164 , ARG A:168binding site for residue EDO A 401
2AC2SOFTWAREGLN A:157 , ALA A:319 , HOH A:503binding site for residue EDO A 402
3AC3SOFTWAREALA A:58 , GLU A:59 , GLY A:60 , SER A:63 , ALA A:77 , VAL A:109 , MET A:130 , GLU A:131 , CYS A:133 , GLN A:137 , GLU A:184 , ASN A:185 , LEU A:187 , ASP A:198 , HOH A:550 , HOH A:576 , HOH A:579 , HOH A:611binding site for residue 3JW A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4W9X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4W9X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4W9X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4W9X)

(-) Exons   (0, 0)

(no "Exon" information available for 4W9X)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:300
                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeee..eeeeeeeeeee...eeeeeeee....eeeeeeee..hhhhhhhhhhhhhhhhhhh.......eeeeeee....eeeeeee.....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..........hhh.eee.....eee...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh......hhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhh....................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4w9x A  39 VGVRVFAVGRHQVTLEESLAEGGFSTVFLVRTHGGIRCALKRMYVNNMPDLNVCKREITIMKELSGHKNIVGYLDCAVNSISWEVLILMEYCRAGQVVNQMNKKQTGFTEPEVLQIFCDTCEAVARLHQCKTPIIHRDLKVENILLNDGGNYVLCDFGSATNKFLNPQKDGVNVVEEEIKKYTTLSYRAPEMINLYGGKPITTKADIWALGCLLYKLCFFTLPFGESQVAICDGNFTIPDNSRYSRNIHCLIRFMLEPDPEHRPDIFQVSYFAFKFAAADCPVSNINNSSIPSALPEPMT 342
                                    48        58        68        78        88        98       108       118 ||    131       141   ||  152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342
                                                                                                           120|                  145|                                                                                                                                                                                                   
                                                                                                            124                   147
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4W9X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4W9X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4W9X)

(-) Gene Ontology  (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  4w9x
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  BMP2K_HUMAN | Q9NSY1
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  2.7.11.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BMP2K_HUMAN | Q9NSY1: 4w9w 5i3o 5i3r 5ikw

(-) Related Entries Specified in the PDB File

4w9w 4W9W CONTAINS THE SAME PROTEIN COMPLEXED WITH SMALL MOLECULE INHIBITOR AZD7762