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(-) Description

Title :  2-(4-(1H-TETRAZOL-5-YL)PHENYL)-5-HYDROXYPYRIMIDIN-4(3H)-ONE BOUND TO INFLUENZA 2009 H1N1 ENDONUCLEASE
 
Authors :  J. D. Bauman, D. Patel, K. Das, E. Arnold
Date :  27 Aug 14  (Deposition) - 01 Oct 14  (Release) - 22 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Cap-Snatching, Rna Binding Protein, Rna Binding Protein-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Y. Sagong, J. D. Bauman, D. Patel, K. Das, E. Arnold, E. J. Lavoie
Phenyl Substituted 4-Hydroxypyridazin-3(2H)-Ones And 5-Hydroxypyrimidin-4(3H)-Ones: Inhibitors Of Influenza A Endonuclease.
J. Med. Chem. V. 57 8086 2014
PubMed-ID: 25225968  |  Reference-DOI: 10.1021/JM500958X

(-) Compounds

Molecule 1 - POLYMERASE ACIDIC PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCDF-2
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-204
    Gene: PA
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 387207
    Strain: A/DUCK/HOKKAIDO/8/1980 H3N8
    Synonym: RNA-DIRECTED RNA POLYMERASE SUBUNIT P2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
13K11Ligand/Ion5-HYDROXY-2-[4-(1H-TETRAZOL-5-YL)PHENYL]PYRIMIDIN-4(3H)-ONE
2MN2Ligand/IonMANGANESE (II) ION
3SO42Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:41 , ASP A:108 , GLU A:119 , ILE A:120 , 3K1 A:304binding site for residue MN A 301
2AC2SOFTWAREGLU A:80 , ASP A:108 , 3K1 A:304 , HOH A:471 , HOH A:472 , HOH A:505binding site for residue MN A 302
3AC3SOFTWAREILE A:30 , THR A:32 , ASN A:33 , GLU A:165 , GLU A:166 , HOH A:425 , HOH A:462binding site for residue SO4 A 303
4AC4SOFTWARELYS A:34 , ALA A:37 , HIS A:41 , GLU A:80 , ASP A:108 , GLU A:119 , ILE A:120 , ARG A:124 , LYS A:134 , MN A:301 , MN A:302 , HOH A:453 , HOH A:500 , HOH A:505 , HOH A:506binding site for residue 3K1 A 304
5AC5SOFTWAREGLN A:7 , CYS A:8 , PHE A:9 , ASN A:10binding site for residue SO4 A 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4W9S)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4W9S)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4W9S)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4W9S)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:200
                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh.eee.....eee..........ee.eee....hhhhhhhhhhhhhhhhh.........eee....eeeeeeee..hhhhhhhhhhhhhh....eeeeee....eee.hhh...hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w9s A  -4 GPLGSMEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVCFMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGVEKPKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQEMASRSLWDSFRQSE 195
                                     5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4W9S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4W9S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4W9S)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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(-) Related Entries Specified in the PDB File

4ln7 4m4q 4m5o 4m5q 4m5r 4m5u 4mk1 4mk2 4mk5