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(-) Description

Title :  CRYSTAL STRUCTURE OF CMR1 FROM PYROCOCCUS FURIOSUS BOUND TO A NUCLEOTIDE
 
Authors :  C. Benda, J. Ebert, M. Baumgaertner, E. Conti
Date :  26 Aug 14  (Deposition) - 15 Oct 14  (Release) - 15 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Cmr1, Cmr Complex, Nucleotide-Bound, Crispr, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Benda, J. Ebert, R. A. Scheltema, H. B. Schiller, M. Baumgartner, F. Bonneau, M. Mann, E. Conti
Structural Model Of A Crispr Rna-Silencing Complex Reveals The Rna-Target Cleavage Activity In Cmr4.
Mol. Cell V. 56 43 2014
PubMed-ID: 25280103  |  Reference-DOI: 10.1016/J.MOLCEL.2014.09.002

(-) Compounds

Molecule 1 - CRISPR SYSTEM CMR SUBUNIT CMR1-1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
    Expression System Taxid: 866768
    Gene: CMR1-1, PF1130
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 186497
    Strain: ATCC 43587 / DSM 3638 / JCM 8422 / VC1
    Synonym: TYPE III-B/RAMP MODULE RAMP PROTEIN CMR1-1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
13GP1Ligand/IonGUANOSINE-3'-MONOPHOSPHATE
2PO41Ligand/IonPHOSPHATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:152 , SER A:153 , ARG A:154 , ARG A:155 , HOH A:505binding site for residue PO4 A 401
2AC2SOFTWAREPRO A:30 , ALA A:35 , TRP A:38 , TRP A:39 , SER A:148 , SER A:153 , ARG A:154 , TRP A:279 , HOH A:506binding site for residue 3GP A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4W8X)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:226 -Pro A:227

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4W8X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4W8X)

(-) Exons   (0, 0)

(no "Exon" information available for 4W8X)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:329
                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee......hhhhhh........hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh........eeeeee....ee...hhhhhhh....hhhhhhhhhh....ee.....eeeeeeee.hhhhhhhhhhhhhhhhhhh....hhhhh...eeeeeeehhhhhhhh......hhhhhhhhhhhhhhhhhhhhh...........eeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..................eeeeeeee..eeeeeeeee...................hhhhhhhhhh....eeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w8x A   1 MFIEEFEIESITSTHLLEVLTREYPEVRSPSIKGAMRWWFRALAGSYFGDDAQKLKEIENQVFGSTKERSRVKISVTPLSSPKRLNLKEFKDKNVGYIWFSINLLGKRGTITHYYPPGSRFRVVLESPSERVIKLATLSLWALVSLGSVGFRSRRGTGSMKIVRASSEVLEDLGLTTEFNSIDEFKDSLKRVLDVTGEILGVSLPSYATLKFSDVEVFGPGKNTWEVLAQFNNSYKEYLRRRIKKYQRIIFGLPRFKLRGVRKDLRRASPLWFGVVEIGGKPYGRIIKFFQSTFHPEVRSKHIVDWNVLSNFDWFISSRLPVTKVWGGW 336
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200 ||    217       227       237       247       257       267       277       287       297       307       317       327         
                                                                                                                                                                                                                                   202|                                                                                                                              
                                                                                                                                                                                                                                    210
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4W8X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4W8X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4W8X)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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  4w8x
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  CMR1A_PYRFU | Q8U1S5
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 Related Entries

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        CMR1A_PYRFU | Q8U1S5: 4w8z

(-) Related Entries Specified in the PDB File

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