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(-) Description

Title :  TETRAMERIC BAP29 VDED WITH DISULFIDE BONDS IN CRYSTAL CONTACTS
 
Authors :  E. M. Quistgaard
Date :  22 Aug 14  (Deposition) - 29 Oct 14  (Release) - 19 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Coiled Coil, Nanomaterial, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. M. Quistgaard
A Disulfide Polymerized Protein Crystal.
Chem. Commun. (Camb. ) V. 50 14995 2014
PubMed-ID: 25327138  |  Reference-DOI: 10.1039/C4CC07326F

(-) Compounds

Molecule 1 - B-CELL RECEPTOR-ASSOCIATED PROTEIN 29
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 168-229
    Gene: BCAP29, BAP29
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BAP29

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 10)

Asymmetric/Biological Unit (1, 10)
No.NameCountTypeFull Name
1SO410Ligand/IonSULFATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:185 , THR A:189 , ARG A:192binding site for residue SO4 A 301
02AC2SOFTWARELYS A:179 , LYS B:179 , ARG D:214binding site for residue SO4 A 302
03AC3SOFTWAREARG A:192 , ASP A:196 , LYS A:200 , SO4 A:305binding site for residue SO4 A 303
04AC4SOFTWAREARG A:214 , ARG B:214 , LYS C:179 , LYS D:179 , LYS D:186binding site for residue SO4 A 304
05AC5SOFTWAREARG A:192 , LYS A:193 , SO4 A:303binding site for residue SO4 A 305
06AC6SOFTWARELYS B:193 , LYS C:209 , LYS D:200binding site for residue SO4 B 301
07AC7SOFTWARELYS B:200 , LYS D:193binding site for residue SO4 B 302
08AC8SOFTWARETHR B:189 , ARG B:192binding site for residue SO4 B 303
09AC9SOFTWARETHR C:189 , ARG C:192binding site for residue SO4 C 301
10AD1SOFTWARETHR D:189 , ARG D:192binding site for residue SO4 D 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4W80)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4W80)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4W80)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4W80)

(-) Exons   (0, 0)

(no "Exon" information available for 4W80)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:64
                                                                                                
               SCOP domains ---------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                 4w80 A 166 SMDEECVLEAENKKLVEDQEKLKTELRKTSDALSKAQNDVMEMKMQSERLSKEYDQLLKEHSEL 229
                                   175       185       195       205       215       225    


Chain B from PDB  Type:PROTEIN  Length:64
                                                                                                
               SCOP domains ---------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                 4w80 B 166 SMDEECVLEAENKKLVEDQEKLKTELRKTSDALSKAQNDVMEMKMQSERLSKEYDQLLKEHSEL 229
                                   175       185       195       205       215       225    


Chain C from PDB  Type:PROTEIN  Length:59
                                                                                           
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                 4w80 C 170 ECVLEAENKKLVEDQEKLKTELRKTSDALSKAQNDVMEMKMQSERLSKEYDQLLKEHSE 228
                                   179       189       199       209       219         


Chain D from PDB  Type:PROTEIN  Length:58
                                                                                          
               SCOP domains ---------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------- Transcript
                 4w80 D 170 ECVLEAENKKLVEDQEKLKTELRKTSDALSKAQNDVMEMKMQSERLSKEYDQLLKEHS 227
                                   179       189       199       209       219
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4W80)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4W80)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4W80)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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  4w80
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BAP29_HUMAN | Q9UHQ4: 4w7y 4w7z

(-) Related Entries Specified in the PDB File

4w7y 4w7z