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(-) Description

Title :  CRYSTAL STRUCTURE OF DEH REDUCTASE A1-R' MUTANT
 
Authors :  R. Takase, B. Mikami, S. Kawai, K. Murata, W. Hashimoto
Date :  22 Aug 14  (Deposition) - 24 Sep 14  (Release) - 10 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.98
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (2x)
Biol. Unit 2:  C,D  (2x)
Keywords :  Alpha/Beta/Alpha, Rossmann-Fold, Alginate Metabolism, Short-Chain Dehydrogenase/Reductase, Oxidoreductase, Loop-Exchange (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Takase, B. Mikami, S. Kawai, K. Murata, W. Hashimoto
Structure-Based Conversion Of The Coenzyme Requirement Of A Short-Chain Dehydrogenase/Reductase Involved In Bacterial Alginate Metabolism.
J. Biol. Chem. V. 289 33198 2014
PubMed-ID: 25288804  |  Reference-DOI: 10.1074/JBC.M114.585661

(-) Compounds

Molecule 1 - 4-DEOXY-L-ERYTHRO-5-HEXOSEULOSE URONATE REDUCTASE A1-R'
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: SPHINGOMONAS SP. A1
    Organism Taxid: 90322

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (2x): AB  
Biological Unit 2 (2x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4W7I)

(-) Sites  (0, 0)

(no "Site" information available for 4W7I)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4W7I)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4W7I)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4W7I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4W7I)

(-) Exons   (0, 0)

(no "Exon" information available for 4W7I)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhh..eeee....hhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhh.eeeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee..hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.....hhhhhh.......hhhhhhhhhhhhhhhhhhh....eeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4w7i A   2 FSDLKGKRILITGSSQGIGMATAIELARYGAVVGLHGRKAPADPALLLGKLREAGGDGAFFRADITKTAECQRLVSAFVERFDGIDVLINNAGGLAGRSNLENIDDAFYDRVMDLNGRSVLMMTKFAIPHLRASAKASGTTSAVISTGSIAAREGGGIGAGVYAASKAWLHDIHRNWVKEFTKDSIRFNIVAPGTVDKTRIANSIPMGRFGTVQELAPAYVFFASHAASGYITGQILDVNGGQICP 258
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191      |212       222       232       242       252      
                                                                                                                                                                                                                              198|                                                
                                                                                                                                                                                                                               210                                                


Chain B from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhh..eeee....hhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhh.eeeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee..hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.......hhhhh......hhhhhhhhhhhhhhhhhhh....eeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4w7i B   2 FSDLKGKRILITGSSQGIGMATAIELARYGAVVGLHGRKAPADPALLLGKLREAGGDGAFFRADITKTAECQRLVSAFVERFDGIDVLINNAGGLAGRSNLENIDDAFYDRVMDLNGRSVLMMTKFAIPHLRASAKASGTTSAVISTGSIAAREGGGIGAGVYAASKAWLHDIHRNWVKEFTKDSIRFNIVAPGTVDKTRIANSIPMGRFGTVQELAPAYVFFASHAASGYITGQILDVNGGQICP 258
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191      |212       222       232       242       252      
                                                                                                                                                                                                                              198|                                                
                                                                                                                                                                                                                               210                                                


Chain C from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhh..eeee....hhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhh.eeeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee..hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.....hhhhhh.......hhhhhhhhhhhhhhhhhhh....eeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4w7i C   2 FSDLKGKRILITGSSQGIGMATAIELARYGAVVGLHGRKAPADPALLLGKLREAGGDGAFFRADITKTAECQRLVSAFVERFDGIDVLINNAGGLAGRSNLENIDDAFYDRVMDLNGRSVLMMTKFAIPHLRASAKASGTTSAVISTGSIAAREGGGIGAGVYAASKAWLHDIHRNWVKEFTKDSIRFNIVAPGTVDKTRIANSIPMGRFGTVQELAPAYVFFASHAASGYITGQILDVNGGQICP 258
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191      |212       222       232       242       252      
                                                                                                                                                                                                                              198|                                                
                                                                                                                                                                                                                               210                                                


Chain D from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh..eeee....hhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhh.eeeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee..hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.......hhhhh......hhhhhhhhhhhhhhhhhhh....eeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w7i D   1 MFSDLKGKRILITGSSQGIGMATAIELARYGAVVGLHGRKAPADPALLLGKLREAGGDGAFFRADITKTAECQRLVSAFVERFDGIDVLINNAGGLAGRSNLENIDDAFYDRVMDLNGRSVLMMTKFAIPHLRASAKASGTTSAVISTGSIAAREGGGIGAGVYAASKAWLHDIHRNWVKEFTKDSIRFNIVAPGTVDKTRIANSIPMGRFGTVQELAPAYVFFASHAASGYITGQILDVNGGQICP 258
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       211       221       231       241       251       
                                                                                                                                                                                                                               198|                                                
                                                                                                                                                                                                                                210
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4W7I)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4W7I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4W7I)

(-) Gene Ontology  (0, 0)

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 Related Entries

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4tkl 4w7h