4W79 - JenaLib

Title :   CRYSTAL STRUCTURE OF HUMAN PROTEIN N-TERMINAL GLUTAMINE AMIDOHYDROLASE

Authors :   E. Bitto, C. A. Bingman, J. G. Mccoy, G. E. Wesenberg, G. N. Phillips Jr. For Eukaryotic Structural Genomics (Cesg)

Date :   21 Aug 14 (Deposition) - 17 Sep 14 (Release) - 10 Dec 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.50

Chains :   Asym./Biol. Unit : A

Keywords :   Protein Structure Initiative, Psi-2, Center For Eukaryotic Structural Genomics, Cesg, Structural Genomics, Glutamine Aminohydrolase, Hntaq1 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. S. Park, E. Bitto, K. R. Kim, C. A. Bingman, M. D. Miller, H. J. Kim, B. W. Han, G. N. Phillips
Crystal Structure Of Human Protein N-Terminal Glutamine Amidohydrolase, An Initial Component Of The N-End Rule Pathway.
Plos One V. 9 11142 2014
PubMed-ID: 25356641 | Reference-DOI: 10.1371/JOURNAL.PONE.0111142

Compounds

Molecule 1 - PROTEIN N-TERMINAL GLUTAMINE AMIDOHYDROLASE
	Chains	:	A
	EC Number	:	3.5.1.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PVP16
	Expression System Strain	:	B834 P(RARE2)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	WDYHV1, C8ORF32, NTAQ1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	PROTEIN NH2-TERMINAL GLUTAMINE DEAMIDASE,NT(Q)-AMIDASE,WDYHV MOTIF-CONTAINING PROTEIN 1

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 19)

Sites (15, 15)

Asymmetric Unit (15, 15)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS A:60 , ASP A:79 , ASN A:176 , HOH A:676	binding site for residue EDO A 301
02	AC2	SOFTWARE	PRO A:16 , CYS A:21 , VAL A:22 , LYS A:34 , TYR A:38 , HOH A:440 , HOH A:457 , HOH A:554	binding site for residue EDO A 302
03	AC3	SOFTWARE	TRP A:33 , LYS A:34 , PRO A:164 , HOH A:406 , HOH A:415 , HOH A:425	binding site for residue EDO A 303
04	AC4	SOFTWARE	LYS A:40 , ASN A:41 , ARG A:146 , TRP A:156 , PRO A:160 , CYS A:165 , SO4 A:307	binding site for residue EDO A 304
05	AC5	SOFTWARE	HIS A:10 , TRP A:65 , GLY A:74 , LYS A:117 , HOH A:412	binding site for residue EDO A 305
06	AC6	SOFTWARE	ARG A:18 , PRO A:103 , PHE A:104 , HOH A:421 , HOH A:443 , HOH A:565 , HOH A:623 , HOH A:668	binding site for residue SO4 A 306
07	AC7	SOFTWARE	LYS A:40 , ARG A:146 , TYR A:163 , PRO A:164 , CYS A:165 , EDO A:304 , HOH A:403 , HOH A:416 , HOH A:423 , HOH A:455	binding site for residue SO4 A 307
08	AC8	SOFTWARE	TRP A:65 , LYS A:66 , GLY A:72 , ASP A:73 , GLY A:74 , HOH A:413 , HOH A:452 , HOH A:574 , HOH A:597 , HOH A:607	binding site for residue SO4 A 308
09	AC9	SOFTWARE	LYS A:117 , SER A:118 , HOH A:412 , HOH A:417 , HOH A:438 , HOH A:499 , HOH A:582 , HOH A:662	binding site for residue SO4 A 309
10	AD1	SOFTWARE	ARG A:127 , HOH A:402 , HOH A:620 , HOH A:630 , HOH A:648	binding site for residue SO4 A 310
11	AD2	SOFTWARE	ALA A:7 , ALA A:8 , VAL A:9 , HIS A:10	binding site for residue SO4 A 311
12	AD3	SOFTWARE	TYR A:51 , VAL A:132 , ALA A:189 , ARG A:199 , HOH A:429	binding site for residue CO3 A 312
13	AD4	SOFTWARE	HIS A:42 , ASP A:43 , GLN A:44	binding site for residue CO3 A 313
14	AD5	SOFTWARE	TYR A:51 , ARG A:199 , HOH A:433 , HOH A:470 , HOH A:614 , HOH A:669	binding site for residue CO3 A 314
15	AD6	SOFTWARE	CYS A:134 , ASP A:136 , SER A:137 , GLU A:158 , GLY A:186 , TRP A:187 , GLY A:188 , HOH A:420 , HOH A:498 , HOH A:517 , HOH A:575 , HOH A:706	binding site for residue PG4 A 315

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhh.....hhhhhhhhhhhhhhhh...hhh.eeeeeee.....eee...........eee..eeeeeeee...eeeee.........eehhhhhhhh.......hhhhh.eeeeeehhhhhhhh...hhhhh........................hhhhhh........eeeehhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w79 A   1 SEGNGPAAVHYQPASPPRDACVYSSCYCEENVWKLCEYIKNHDQYPLEECYAVFISNERKmIPIWKQQARPGDGPVIWDYHVVLLHVSSGGQSFIYDLDTVLPFPCLFDTYVEDAIKSDDDIHPQFRRKFRVICADSYLKNFASDRSHmKDSSGNWREPPPPYPCIETGDSKmNLNDFISmDPKVGWGAVYTLSEFTHRFGS 202
                                    10        20        30        40        50        60|       70        80        90       100       110       120       130       140       150       160       170  |    180|      190       200  
                                                                                       61-MSE                                                                                 149-MSE                 173-MSE 181-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

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	Cis Peptide Bonds
		Gly A:5 - Pro A:6	[ RasMol ]
		Gly A:74 - Pro A:75	[ RasMol ]
		Phe A:104 - Pro A:105	[ RasMol ]

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