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(-) Description

Title :  THE STRUCTURE OF VACCINA VIRUS H7 PROTEIN DISPLAYS A NOVEL PHOSPHOINOSITIDE BINDING FOLD REQUIRED FOR MEMBRANE BIOGENESIS
 
Authors :  S. Kolli, J. Deng
Date :  19 Aug 14  (Deposition) - 31 Dec 14  (Release) - 04 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Protein Phosphoinositide, Membrane Biogenesis, Poxvirus, Lipid Binding, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Kolli, X. Meng, X. Wu, D. Shengjuler, C. E. Cameron, Y. Xiang, J. Deng
Structure-Function Analysis Of Vaccinia Virus H7 Protein Reveals A Novel Phosphoinositide Binding Fold Essential For Poxvirus Replication.
J. Virol. V. 89 2209 2015
PubMed-ID: 25473060  |  Reference-DOI: 10.1128/JVI.03073-14

(-) Compounds

Molecule 1 - LATE PROTEIN H7
    Chains: B, A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21GOLDDE3
    Expression System Taxid: 511693
    Fragment: UNP RESIDUES 1-118
    Gene: VACWR105, H7R
    Mutation: YES
    Organism Common: VACV
    Organism Scientific: VACCINIA VIRUS
    Organism Taxid: 10254
    Strain: WESTERN RESERVE
    Synonym: PROTEIN H8

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4W5X)

(-) Sites  (0, 0)

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(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1B:76 -A:76

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

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   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:117
                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh......hhhhhhhhhhhhhh....eeeeee.....eeeeee....hhhhhhh...ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 4w5x A   2 EMDKRMKSLAMTAFFGELSTLDIMALIMSIFKRHPNNTIFSVDKDGQFMIDFEYDNYKASQYLDLTLTPISGDECKTHASSIAEQLASVDIIKEDISEYIKTTPRLKRFIKKYRNRS 118
                                    11        21        31        41        51        61        71        81        91       101       111       


Chain B from PDB  Type:PROTEIN  Length:116
                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh......hhhhhhhhhhhhhh....eeeeee.....eeeeee....hhhhhhh...ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 4w5x B   2 EMDKRMKSLAMTAFFGELSTLDIMALIMSIFKRHPNNTIFSVDKDGQFMIDFEYDNYKASQYLDLTLTPISGDECKTHASSIAEQLASVDIIKEDISEYIKTTPRLKRFIKKYRNR 117
                                    11        21        31        41        51        61        71        81        91       101       111
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4W5X)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (2, 2)

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 Related Entries

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UniProtKB/Swiss-Prot
        H7_VACCW | P08586: 4w60

(-) Related Entries Specified in the PDB File

4w5y 4w60