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(-) Description

Title :  THREE-DIMENSIONAL STRUCTURE OF A VARIANT `TERMAMYL-LIKE' GEOBACILLUS STEAROTHERMOPHILUS ALPHA-AMYLASE AT 1.9 A RESOLUTION
 
Authors :  W. A. Offen, C. Anderson, T. V. Borchert, K. S. Wilson, G. J. Davies
Date :  09 Sep 14  (Deposition) - 14 Jan 15  (Release) - 04 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. A. Offen, A. Viksoe-Nielsen, T. V. Borchert, K. S. Wilson, G. J. Davies
Three-Dimensional Structure Of A Variant `Termamyl-Like' Geobacillus Stearothermophilus Alpha-Amylase At 1. 9 A Resolution
Acta Crystallogr. , Sect. F V. 71 66 2015
PubMed-ID: 25615972  |  Reference-DOI: 10.1107/S2053230X14026508

(-) Compounds

Molecule 1 - ALPHA-AMYLASE
    Chains: A
    EC Number: 3.2.1.1
    Engineered: YES
    Expression System: BACILLUS LICHENIFORMIS
    Expression System Taxid: 1402
    Fragment: ALPHA AMYLASE WITH 2 RESIDUE DELETION, RESIDUES 35-549
    Mutation: YES
    Organism Scientific: GEOBACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422
    Other Details: DELETION AT 181-182, AND EXTRA PROLINE RESIDUE AT C TERMINUS, PRO513
    Synonym: TERMAMYL AMYLASE, 1,4-ALPHA-D-GLUCAN GLUCANOHYDROLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 10)

Asymmetric/Biological Unit (4, 10)
No.NameCountTypeFull Name
1CA3Ligand/IonCALCIUM ION
2CL2Ligand/IonCHLORIDE ION
3GLY2Mod. Amino AcidGLYCINE
4NA3Ligand/IonSODIUM ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:162 , ALA A:182 , ASP A:184 , ASP A:203 , HOH A:2185 , HOH A:2199BINDING SITE FOR RESIDUE CA A1483
02AC2SOFTWAREASP A:105 , ASP A:195 , ASP A:201 , HIS A:236 , HOH A:2110BINDING SITE FOR RESIDUE CA A1484
03AC3SOFTWAREGLY A:301 , PHE A:303 , SER A:404 , ASP A:405 , ASP A:428 , HOH A:2298BINDING SITE FOR RESIDUE CA A1485
04AC4SOFTWAREGLN A:128BINDING SITE FOR RESIDUE CL A1486
05AC5SOFTWARELYS A:177 , HOH A:2200BINDING SITE FOR RESIDUE CL A1487
06AC6SOFTWAREASP A:162 , ASP A:184 , ASP A:195 , ASP A:201 , LEU A:202BINDING SITE FOR RESIDUE NA A1491
07AC7SOFTWAREHOH A:2143 , HOH A:2144 , HOH A:2145 , HOH A:2155 , HOH A:2156BINDING SITE FOR RESIDUE NA A1492
08AC8SOFTWAREASP A:232 , GLU A:262 , HOH A:2241 , HOH A:2242 , HOH A:2261BINDING SITE FOR RESIDUE NA A1490
09AC9SOFTWARETYR A:134 , HOH A:2134BINDING SITE FOR RESIDUE GLY A1488
10BC1SOFTWAREGLY A:109 , TYR A:199 , HOH A:2186BINDING SITE FOR RESIDUE GLY A1489

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UZU)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Trp A:185 -Glu A:186

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UZU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UZU)

(-) Exons   (0, 0)

(no "Exon" information available for 4UZU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:481
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee..........hhhhhhhhhhhhhhhh...eeee....ee.........eee..................hhhhhhhhhhhhhhh..eeeeee...ee....eeeeeeeeeee..eeeee....eeeeeeee...............hhh.eeeeeee....eeeeeee.....................eee...hhhhhhhhhhhhhhhhhhhh..eeee.hhhhh..hhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhh....eeehhhhhhhhhhhhh.....hhhhh...hhhhhh...eeee...................hhhhhhhhhhhh...eeeeehhhhhh.hhhh...hhhhhhhhhhhhhhh....eeee.....eeeeee..........eeeeee....eeeeee.hhhhh..eeee.......eee.....eeeeee....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4uzu A    4 FNGTMMQYFEWYLPDDGTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGTVRTKYGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYHFDGVDWDESRKLSRIYKFRGKAWDWEVDTEFGNYDYLMYADLDMDHPEVVTELKNWGKWYVNTTNIDGFRLDAVKHIKFSFFPDWLSYVRSQTGKPLFTVGEYWSYDINKLHNYITKTDGTMSLFDAPLHNKFYTASKSGGAFDMRTLMTNTLMKDQPTLAVTFVDNHDTEPGQALQSWVDPWFKPLAYAFILTRQEGYPCVFYGDYYGIPQYNIPSLKSKIDPLLIARRDYAYGTQHDYLDHSDIIGWTREGGTEKPGSGLAALITDGPGGSKWMYVGKQHAGKVFYDLTGNRSDTVTINSDGWGEFKVNGGSVSVWVPRKGG 1489
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473      1488 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        482| 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        1488
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UZU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UZU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UZU)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Trp A:185 - Glu A:186   [ RasMol ]  
 

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        AMY_GEOSE | P06279: 1hvx

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