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(-) Description

Title :  STRUCTURE OF LIPRIN-ALPHA3 IN COMPLEX WITH MDIA1 DIAPHANOUS-INHIBITORY DOMAIN
 
Authors :  J. Brenig, S. De Boor, P. Knyphausen, N. Kuhlmann, S. Wroblowski, L. Ba L. Scislowski, O. Artz, P. Trauschies, U. Baumann, I. Neundorf, M. Lam
Date :  15 Aug 14  (Deposition) - 06 May 15  (Release) - 17 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Peptide-Binding Protein, Actin Polymerisation, Rhognbps, Synape Maturation, Cell Motility, Fh1, Fh2 Domain, Actin-Nucleation Factor - Diaphanous-Related Formin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Brenig, S. De Boor, P. Knyphausen, N. Kuhlmann, S. Wroblowski, L. Baldus, L. Scislowski, O. Artz, P. Trauschies, U. Baumann, I. Neundorf, M. Lammers
Structural And Biochemical Basis For The Inhibitory Effect Of Liprin-Alpha3 On Mouse Diaphanous 1 (Mdia1) Function.
J. Biol. Chem. V. 290 14314 2015
PubMed-ID: 25911102  |  Reference-DOI: 10.1074/JBC.M114.621946

(-) Compounds

Molecule 1 - PROTEIN DIAPHANOUS HOMOLOG 1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: DIAPHANOUS-INHIBITORY DOMAIN, RESIDUES 135-369
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: DIAPHANOUS-RELATED FORMIN-1, DRF1, P140MDIA, MDIA1, MDIA1
 
Molecule 2 - LIPRIN-ALPHA-3
    Chains: C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: COILED-COIL DOMAIN
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: PROTEIN TYROSINE PHOSPHATASE RECEPTOR TYPE F POLYPEPTIDE-IN TERACTING PROTEIN ALPHA-3, PTPRF-INTERACTING PROTEIN ALPHA-3, LIPR IN-ALPHA3

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
11442Ligand/IonTRIS-HYDROXYMETHYL-METHYL-AMMONIUM
2NI2Ligand/IonNICKEL (II) ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
11441Ligand/IonTRIS-HYDROXYMETHYL-METHYL-AMMONIUM
2NI-1Ligand/IonNICKEL (II) ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
11441Ligand/IonTRIS-HYDROXYMETHYL-METHYL-AMMONIUM
2NI-1Ligand/IonNICKEL (II) ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:142 , HIS A:151 , 144 A:1370 , HIS B:324BINDING SITE FOR RESIDUE NI A1369
2AC2SOFTWAREGLU A:142 , HIS A:151 , NI A:1369 , HOH A:2020 , HIS B:324BINDING SITE FOR RESIDUE 144 A1370
3AC3SOFTWAREHIS A:324 , GLU B:142 , HIS B:151 , 144 B:1371BINDING SITE FOR RESIDUE NI B1370
4AC4SOFTWAREHIS A:324 , ARG A:331 , HOH A:2157 , HOH A:2160 , GLU B:142 , HIS B:151 , NI B:1370BINDING SITE FOR RESIDUE 144 B1371

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UWX)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Gly A:131 -Ser A:132
2Gln A:262 -Pro A:263
3Gln B:262 -Pro B:263

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UWX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UWX)

(-) Exons   (0, 0)

(no "Exon" information available for 4UWX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:234
                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhh....hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...hhhhhhhh....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4uwx A 131 GSEFSAMMYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLK 368
                                   140       150       160       170       180       190  ||   204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    
                                                                                        193|                                                                                                                                                                          
                                                                                         198                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:230
                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhh....hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...hhhhhhhh....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uwx B 135 SAMMYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKG 369
                                   144       154       164       174       184       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369
                                                                                    193|                                                                                                                                                                          
                                                                                     199                                                                                                                                                                          


Chain C from PDB  Type:PROTEIN  Length:15
                                               
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                 4uwx C 567 TPRSARLERMAQALA 581
                                   576     


Chain D from PDB  Type:PROTEIN  Length:16
                                                
               SCOP domains ---------------- SCOP domains
               CATH domains ---------------- CATH domains
               Pfam domains ---------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------- SAPs(SNPs)
                    PROSITE ---------------- PROSITE
                 Transcript ---------------- Transcript
                 4uwx D 567 TPRSARLERMAQALAL 582
                                   576
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UWX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UWX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UWX)

(-) Gene Ontology  (35, 36)

Asymmetric Unit(hide GO term definitions)

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  4uwx
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  LIPA3_MOUSE | P60469
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        DIAP1_MOUSE | O08808: 1v9d 1z2c 2bap 2bnx 2f31 2v8f 3eg5 3o4x 3obv

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