4UW5 - JenaLib

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Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   HUMAN GALECTIN-7 IN COMPLEX WITH A GALACTOSE BASED DENDRON D2-2.

Authors :   S. Ramaswamy, M. H. Sleiman, G. Masuyer, C. Arbez-Gindre, M. Micha-Scr T. Calogeropoulou, B. R. Steele, K. R. Acharya

Date :   08 Aug 14 (Deposition) - 12 Nov 14 (Release) - 04 Feb 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.04

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)

Keywords :   Sugar Binding Protein, Lectin, Dendrimers, Multivalency, Carbohydrate Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Ramaswamy, M. Haj Sleiman, G. Masuyer, C. Arbez-Gindre, M. Micha-Screttas, T. Calogeropoulou, B. R. Steele, K. R. Acharya
Structural Basis Of Multivalent Galactose-Based Dendrimer Recognition By Human Galectin-7.
Febs J. V. 282 372 2015
PubMed-ID: 25367374 | Reference-DOI: 10.1111/FEBS.13140

Molecule 1 - HUMAN GALECTIN-7
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-22
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	GAL-7, HKL-14, PI7, P53-INDUCED GENE 1 PROTEIN, HUMAN GALECTIN-7

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	4S0	2	Ligand/Ion	DENDRON D2-1

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	4S0	1	Ligand/Ion	DENDRON D2-1

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	4S0	-1	Ligand/Ion	DENDRON D2-1

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	4S0	-1	Ligand/Ion	DENDRON D2-1

Biological Unit 4 (0, 0)

No.	Name	Count	Type	Full Name
1	4S0	-1	Ligand/Ion	DENDRON D2-1

Biological Unit 5 (0, 0)

No.	Name	Count	Type	Full Name
1	4S0	-1	Ligand/Ion	DENDRON D2-1

Biological Unit 6 (1, 1)

No.	Name	Count	Type	Full Name
1	4S0	1	Ligand/Ion	DENDRON D2-1

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:49 , ASN A:51 , ARG A:53 , ASN A:62 , TRP A:69 , GLU A:72 , ARG A:74 , HOH A:2025 , HOH A:2047 , HOH A:2059 , HOH A:2105 , HOH A:2106 , HOH A:2107 , HOH A:2108 , HOH A:2109 , HOH A:2110 , HOH A:2111 , HOH A:2113 , HOH A:2115 , HOH A:2116 , HIS B:49 , ASN B:51 , ARG B:53 , ASN B:62 , TRP B:69 , ARG B:71 , GLU B:72 , ARG B:74 , ASP F:55	BINDING SITE FOR RESIDUE 4S0 A1136
2	AC2	SOFTWARE	GLN A:66 , ARG A:71 , HOH A:2053 , HIS D:49 , ASN D:51 , ARG D:53 , ASN D:62 , TRP D:69 , GLU D:72 , ARG D:74 , HIS F:49 , ASN F:51 , ARG F:53 , ASN F:62 , TRP F:69 , ARG F:71 , GLU F:72 , ARG F:74 , HOH F:2012 , HOH F:2053 , HOH F:2054 , HOH F:2056 , HOH F:2057	BINDING SITE FOR RESIDUE 4S0 F1136

(no "SS Bond" information available for 4UW5)

Asymmetric Unit

No.	Residues
1	Pro F:10	-	Glu F:11

(no "SAP(SNP)/Variant" information available for 4UW5)

(no "PROSITE Motif" information available for 4UW5)

(no "Exon" information available for 4UW5)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee.........eeeeeee.......eeeeee........eeeeeeee....eeeeeeee..ee...ee..........eeeeeeee...eeeeee..eeeeeee...hhhhh.eeeeee..eeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4uw5 A   4 PHKSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRLDTSEVVFNSKEQGSWGREERGPGVPFQRGQPFEVLIIASDDGFKAVVGDAQYHHFRHRLPLARVRLVEVGGDVQLDSVRIF 135
                                    13        23        33        43        53        63        73        83        93       103       113       123       133

Chain B from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.........eeeeeeee......eeeeee........eeeeeeee....eeeeeeee..ee...ee.........eeeeeeeee...eeeeee..eeeeeee...hhhhh.eeeeee..eeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uw5 B   3 VPHKSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRLDTSEVVFNSKEQGSWGREERGPGVPFQRGQPFEVLIIASDDGFKAVVGDAQYHHFRHRLPLARVRLVEVGGDVQLDSVRIF 135
                                    12        22        32        42        52        62        72        82        92       102       112       122       132

Chain C from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee........eeeeeeee.......eeeeee........eeeeeeee....eeeeeeee..ee...ee..........eeeeeeee...eeeeee..eeeeeee...hhhhh.eeeeee..eeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4uw5 C   4 PHKSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRLDTSEVVFNSKEQGSWGREERGPGVPFQRGQPFEVLIIASDDGFKAVVGDAQYHHFRHRLPLARVRLVEVGGDVQLDSVRIF 135
                                    13        23        33        43        53        63        73        83        93       103       113       123       133

Chain D from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee.........eeeeeee.......eeeeee........eeeeeeee....eeeeeeee..ee...ee..........eeeeeeee...eeeeee..eeeeeee...hhhhh.eeeeee..eeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4uw5 D   4 PHKSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRLDTSEVVFNSKEQGSWGREERGPGVPFQRGQPFEVLIIASDDGFKAVVGDAQYHHFRHRLPLARVRLVEVGGDVQLDSVRIF 135
                                    13        23        33        43        53        63        73        83        93       103       113       123       133

Chain E from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee........eeeeeeee.......eeeeee........eeeeeeee....eeeeeeee..ee...ee..........eeeeeeee...eeeeee..eeeeeee...hhhhh.eeeeee..eeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uw5 E   3 VPHKSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRLDTSEVVFNSKEQGSWGREERGPGVPFQRGQPFEVLIIASDDGFKAVVGDAQYHHFRHRLPLARVRLVEVGGDVQLDSVRIF 135
                                    12        22        32        42        52        62        72        82        92       102       112       122       132

Chain F from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..............eeee..ee......eeeeee........eeeeeeee....eeeeeeee..ee...ee.........ee..eeee.....eeeee..eeeeee....hhhhh.eeeeee......eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4uw5 F   4 PHKSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRLDTSEVVFNSKEQGSWGREERGPGVPFQRGQPFEVLIIASDDGFKAVVGDAQYHHFRHRLPLARVRLVEVGGDVQLDSVRIF 135
                                    13        23        33        43        53        63        73        83        93       103       113       123       133

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4UW5)

(no "CATH Domain" information available for 4UW5)

(no "Pfam Domain" information available for 4UW5)

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Asymmetric Unit
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		AC1	[ RasMol ]	+environment [ RasMol ]
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	Cis Peptide Bonds
		Pro F:10 - Glu F:11	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
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		Biological Unit 6	[ Jena3D ]

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	4uw5
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UniProtKB/Swiss-Prot
	LEG7_HUMAN \| P47929	:	1bkz 2gal 3gal 3zxe 3zxf 4gal 4uw3 4uw4 4uw6 4xbq 4y26 5gal 5h9q 5h9s

4uw3	HUMAN GALECTIN-7 IN COMPLEX WITH A GALACTOSE BASED DENDRON D1.
4uw4	HUMAN GALECTIN-7 IN COMPLEX WITH A GALACTOSE BASED DENDRON D2-1.
4uw6	HUMAN GALECTIN-7 IN COMPLEX WITH A GALACTOSE BASED DENDRON D3.

Description

Compounds

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Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

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