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(-) Description

Title :  STRUCTURE OF THE DNA BINDING ETS DOMAIN OF HUMAN ETV4 IN COMPLEX WITH DNA
 
Authors :  J. A. Newman, H. Aitkenhead, C. D. O. Cooper, L. Shrestha, N. Burgess-Br J. Kopec, F. Von Delft, C. H. Arrowsmith, C. Bountra, A. M. Edwards, O.
Date :  31 Jul 14  (Deposition) - 13 Aug 14  (Release) - 10 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1:  J,K,L,V,W,X  (1x)
Biol. Unit 2:  D,E,F,G,H,I  (1x)
Biol. Unit 3:  M,N,O,S,T,U  (1x)
Biol. Unit 4:  A,B,C,P,Q,R  (1x)
Keywords :  Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. D. O. Cooper, J. A. Newman, H. Aitkenhead, C. K. Allerston, O. Gileadi
Structures Of The Ets Domains Of Transcription Factors Etv1 Etv4, Etv5 And Fev: Determinants Of Dna Binding And Redox Regulation By Disulfide Bond Formation.
J. Biol. Chem. V. 290 13692 2015
PubMed-ID: 25866208  |  Reference-DOI: 10.1074/JBC.M115.646737

(-) Compounds

Molecule 1 - ETS TRANSLOCATION VARIANT 4
    Chains: A, D, G, J, M, P, S, V
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Fragment: ETS DOMAIN, RESIDUES 338-435
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ADENOVIRUS E1A ENHANCER-BINDING PROTEIN, E1A-F, POLYOMAVIRUS
 
Molecule 2 - 5'-D(*AP*CP*CP*GP*GP*AP*AP*GP*TP*GP)-3'
    Chains: B, E, H, K, N, Q, T, W
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES
 
Molecule 3 - 5'-D(*AP*CP*TP*TP*CP*CP*GP*GP*TP*CP)-3'
    Chains: C, F, I, L, O, R, U
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES
 
Molecule 4 - 5'-D(*AP*CP*TP*TP*CP*CP*GP*GP*TP*CP)-3'
    Chains: X
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456789101112131415161718192021222324
Asymmetric Unit : ABCDEFGHIJKLMNOPQRSTUVWX
Biological Unit 1 (1x):          JKL         VWX
Biological Unit 2 (1x):    DEFGHI               
Biological Unit 3 (1x):             MNO   STU   
Biological Unit 4 (1x): ABC            PQR      

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4UUV)

(-) Sites  (0, 0)

(no "Site" information available for 4UUV)

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:422 -P:422
2D:422 -G:422
3J:422 -V:422
4M:422 -S:422

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UUV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UUV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UUV)

(-) Exons   (0, 0)

(no "Exon" information available for 4UUV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:96
                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh...ee.....eee..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..eee......eeee..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 4uuv A 339 GALQLWQFLVALLDDPTNAHFIAWTGRGMEFKLIEPEEVARLWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCEPDALFSMAFPD 434
                                   348       358       368       378       388       398       408       418       428      


Chain B from PDB  Type:DNA  Length:10
                                          
                 4uuv B   1 ACCGGAAGTG  10
                                    10


Chain C from PDB  Type:DNA  Length:10
                                          
                 4uuv C   2 ACTTCCGGTC  11
                                    11


Chain D from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh...ee.....eee..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..eee......eeee..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 4uuv D 340 ALQLWQFLVALLDDPTNAHFIAWTGRGMEFKLIEPEEVARLWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCEPDALFSMAFPD 434
                                   349       359       369       379       389       399       409       419       429     


Chain E from PDB  Type:DNA  Length:10
                                          
                 4uuv E   1 ACCGGAAGTG  10
                                    10


Chain F from PDB  Type:DNA  Length:10
                                          
                 4uuv F   1 ACTTCCGGTC  10
                                    10


Chain G from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh...ee.....eee..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..eee......eeee..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 4uuv G 340 ALQLWQFLVALLDDPTNAHFIAWTGRGMEFKLIEPEEVARLWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCEPDALFSMAFPD 434
                                   349       359       369       379       389       399       409       419       429     


Chain H from PDB  Type:DNA  Length:10
                                          
                 4uuv H   1 ACCGGAAGTG  10
                                    10


Chain I from PDB  Type:DNA  Length:10
                                          
                 4uuv I   1 ACTTCCGGTC  10
                                    10


Chain J from PDB  Type:PROTEIN  Length:94
                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh...ee.....eee..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..eee......eeee..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 4uuv J 341 LQLWQFLVALLDDPTNAHFIAWTGRGMEFKLIEPEEVARLWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCEPDALFSMAFPD 434
                                   350       360       370       380       390       400       410       420       430    


Chain K from PDB  Type:DNA  Length:10
                                          
                 4uuv K   1 ACCGGAAGTG  10
                                    10


Chain L from PDB  Type:DNA  Length:10
                                          
                 4uuv L   1 ACTTCCGGTC  10
                                    10


Chain M from PDB  Type:PROTEIN  Length:94
                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh...ee.....eee..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..eee......eeee..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 4uuv M 341 LQLWQFLVALLDDPTNAHFIAWTGRGMEFKLIEPEEVARLWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCEPDALFSMAFPD 434
                                   350       360       370       380       390       400       410       420       430    


Chain N from PDB  Type:DNA  Length:10
                                          
                 4uuv N   1 ACCGGAAGTG  10
                                    10


Chain O from PDB  Type:DNA  Length:10
                                          
                 4uuv O   1 ACTTCCGGTC  10
                                    10


Chain P from PDB  Type:PROTEIN  Length:96
                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh...ee.....eee..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh.eee......eeee..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 4uuv P 339 GALQLWQFLVALLDDPTNAHFIAWTGRGMEFKLIEPEEVARLWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCEPDALFSMAFPD 434
                                   348       358       368       378       388       398       408       418       428      


Chain Q from PDB  Type:DNA  Length:10
                                          
                 4uuv Q   1 ACCGGAAGTG  10
                                    10


Chain R from PDB  Type:DNA  Length:10
                                          
                 4uuv R   1 ACTTCCGGTC  10
                                    10


Chain S from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh...ee.....eee..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..eee......eeee..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 4uuv S 340 ALQLWQFLVALLDDPTNAHFIAWTGRGMEFKLIEPEEVARLWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCEPDALFSMAFPD 434
                                   349       359       369       379       389       399       409       419       429     


Chain T from PDB  Type:DNA  Length:10
                                          
                 4uuv T   1 ACCGGAAGTG  10
                                    10


Chain U from PDB  Type:DNA  Length:10
                                          
                 4uuv U   1 ACTTCCGGTC  10
                                    10


Chain V from PDB  Type:PROTEIN  Length:94
                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh...ee.....eee..hhhhhhhhhhhhh.....hhhhhhhhhhhh.....eee......eeee..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 4uuv V 341 LQLWQFLVALLDDPTNAHFIAWTGRGMEFKLIEPEEVARLWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCEPDALFSMAFPD 434
                                   350       360       370       380       390       400       410       420       430    


Chain W from PDB  Type:DNA  Length:10
                                          
                 4uuv W   1 ACCGGAAGTG  10
                                    10


Chain X from PDB  Type:DNA  Length:10
                                          
                 4uuv X   1 ACTTCCGGTG  10
                                    10
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UUV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UUV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UUV)

(-) Gene Ontology  (23, 23)

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        ETV4_HUMAN | P43268: 4co8 5ilu

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