4UTW - JenaLib

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Title :   STRUCTURAL CHARACTERISATION OF NANE, MANNAC6P C2 EPIMERASE, FROM CLOSTRIDIUM PERFINGENS

Authors :   M. C. Pelissier, C. Sebban-Kreuzer, F. Guerlesquin, J. A. Brannigan, G. J. Davies, Y. Bourne, F. Vincent

Date :   23 Jul 14 (Deposition) - 15 Oct 14 (Release) - 14 Jan 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,D  (1x)
Biol. Unit 2: B (1x),C (1x)
Biol. Unit 3: B (1x),C (1x)

Keywords :   Isomerase, Sugar 2-Epimerase, Sialic Acid, Sugar Phosphate, Enzyme Mechanism, Carbohydrate, Mutagenesis, 1H Nmr Spectroscopy (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. C. Pelissier, C. Sebban-Kreuzer, F. Guerlesquin, J. A. Brannigan, G. J. Davies, Y. Bourne, F. Vincent
Structural And Functional Characterization Of The Clostridium Perfringens N-Acetylmannosamine-6-Phosphate 2-Epimerase Essential For The Sialic Acid Salvage Pathway
J. Biol. Chem. V. 289 35215 2014
PubMed-ID: 25320079 | Reference-DOI: 10.1074/JBC.M114.604272

Molecule 1 - PUTATIVE N-ACETYLMANNOSAMINE-6-PHOSPHATE 2-EPIMERASE
	Chains	:	A, B
	EC Number	:	5.1.3.9
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-YSBLIC
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	ROSETTA
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	CLOSTRIDIUM PERFRINGENS STR. 13
	Organism Taxid	:	195102
	Other Details	:	8 CHLORIDE IONS AND 4 ACTETATE MOLECULES ARE BOUND TO THE 4 MONOMERS
	Synonym	:	MANNAC-6-P EPIMERASE, N-ACETYLMANNOSAMINE-6-PHOSPHATE 2-EPIMERASE

Molecule 2 - PUTATIVE N-ACETYLMANNOSAMINE-6-PHOSPHATE 2-EPIMERASE
	Chains	:	C, D
	EC Number	:	5.1.3.9
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-YSBLIC
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	ROSETTA
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	CLOSTRIDIUM PERFRINGENS STR. 13
	Organism Taxid	:	195102
	Other Details	:	8 CHLORIDE IONS AND 4 ACTETATE MOLECULES ARE BOUND TO THE 4 MONOMERS
	Synonym	:	MANNAC-6-P EPIMERASE, N-ACETYLMANNOSAMINE-6-PHOSPHATE 2-EPIMERASE

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A			D
Biological Unit 2 (1x)	:		B (1x)	C (1x)
Biological Unit 3 (1x)	:		B (1x)	C (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 8)

No.	Name	Count	Type	Full Name
1	CL	4	Ligand/Ion	CHLORIDE ION
2	RFW	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE-6-PHOSPHATE

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	RFW	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE-6-PHOSPHATE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	RFW	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE-6-PHOSPHATE

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	RFW	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE-6-PHOSPHATE

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:208 , PRO A:209 , GLN A:210 , HOH A:2069 , HOH A:2070	BINDING SITE FOR RESIDUE CL A1221
2	AC2	SOFTWARE	GLN A:14 , ARG A:43 , ILE A:64 , LYS A:66 , TYR A:75 , THR A:147 , TYR A:151 , GLU A:180 , ARG A:182 , GLY A:203 , GLY A:204 , ARG A:208 , HOH A:2007 , HOH A:2051 , HOH A:2052 , HOH A:2133 , HOH A:2214 , HOH A:2219 , HOH A:2254 , HOH A:2255 , HOH A:2278 , HOH A:2282	BINDING SITE FOR RESIDUE RFW A1222
3	AC3	SOFTWARE	ARG B:208 , PRO B:209 , GLN B:210 , HOH B:2060 , HOH B:2061	BINDING SITE FOR RESIDUE CL B1221
4	AC4	SOFTWARE	GLN B:14 , ARG B:43 , ILE B:64 , LYS B:66 , TYR B:75 , THR B:147 , TYR B:151 , GLU B:180 , ARG B:182 , GLY B:203 , GLY B:204 , ARG B:208 , HOH B:2006 , HOH B:2048 , HOH B:2049 , HOH B:2196 , HOH B:2200 , HOH B:2230 , HOH B:2231 , HOH B:2247 , HOH B:2251 , HOH B:2265 , HOH B:2266	BINDING SITE FOR RESIDUE RFW B1222
5	AC5	SOFTWARE	ARG C:208 , PRO C:209 , GLN C:210 , HOH C:2050 , HOH C:2051	BINDING SITE FOR RESIDUE CL C1221
6	AC6	SOFTWARE	GLN C:14 , ARG C:43 , ILE C:64 , LYS C:66 , TYR C:75 , ILE C:76 , TYR C:151 , GLU C:180 , GLY C:181 , ARG C:182 , GLY C:203 , GLY C:204 , ARG C:208 , HOH C:2036 , HOH C:2039 , HOH C:2169 , HOH C:2173 , HOH C:2199 , HOH C:2200 , HOH C:2213 , HOH C:2232	BINDING SITE FOR RESIDUE RFW C1222
7	AC7	SOFTWARE	ARG D:208 , PRO D:209 , GLN D:210 , HOH D:2044	BINDING SITE FOR RESIDUE CL D1221
8	AC8	SOFTWARE	GLN D:14 , ARG D:43 , ILE D:64 , LYS D:66 , TYR D:75 , THR D:147 , TYR D:151 , GLU D:180 , ARG D:182 , GLY D:203 , GLY D:204 , ARG D:208 , HOH D:2030 , HOH D:2033 , HOH D:2147 , HOH D:2153 , HOH D:2171 , HOH D:2172 , HOH D:2188 , HOH D:2193	BINDING SITE FOR RESIDUE RFW D1222

(no "SS Bond" information available for 4UTW)

(no "Cis Peptide Bond" information available for 4UTW)

(no "SAP(SNP)/Variant" information available for 4UTW)

(no "PROSITE Motif" information available for 4UTW)

(no "Exon" information available for 4UTW)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:229
                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhh..eeeee.........hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhh..eeee..............hhhhhhhhhh....eeeee.....hhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhh...eee................hhhhhhhhhhhh...eeee....hhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4utw A  -8 GSHHHHHHHMLDVVKGNLIVSCQALSDEPLHSSFIMGRMAIAAKQGGAAAIRAQGVNDINEIKEVTKLPIIGIIKRNYDDSEIYITPTMKEVDELLKTDCEMIALDATKRKRPNGENVKDLVDAIHAKGRLAMADISTLEEGIEAEKLGFDCVSTTLSGYTPYSKQSNSVDFELLEELVKTVKIPVICEGRINTPEELKKALDLGAYSAVVGGAITRPQQITKRFTDIL 220
                                     1        11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211

Chain B from PDB  Type:PROTEIN  Length:229
                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhh..eeee..........hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhh..eeee..............hhhhhhhhhh....eeeee.....hhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhh...eee................hhhhhhhhhhhh...eeee....hhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4utw B  -8 GSHHHHHHHMLDVVKGNLIVSCQALSDEPLHSSFIMGRMAIAAKQGGAAAIRAQGVNDINEIKEVTKLPIIGIIKRNYDDSEIYITPTMKEVDELLKTDCEMIALDATKRKRPNGENVKDLVDAIHAKGRLAMADISTLEEGIEAEKLGFDCVSTTLSGYTPYSKQSNSVDFELLEELVKTVKIPVICEGRINTPEELKKALDLGAYSAVVGGAITRPQQITKRFTDIL 220
                                     1        11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211

Chain C from PDB  Type:PROTEIN  Length:229
                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhh..eeee..........hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhh..eeee..............hhhhhhhhhh....eeeee.....hhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhh...eee................hhhhhhhhhhhh...eeee....hhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4utw C  -8 GSSHHHHHHMLDVVKGNLIVSCQALSDEPLHSSFIMGRMAIAAKQGGAAAIRAQGVNDINEIKEVTKLPIIGIIKRNYDDSEIYITPTMKEVDELLKTDCEMIALDATKRKRPNGENVKDLVDAIHAKGRLAMADISTLEEGIEAEKLGFDCVSTTLSGYTPYSKQSNSVDFELLEELVKTVKIPVICEGRINTPEELKKALDLGAYSAVVGGAITRPQQITKRFTDIL 220
                                     1        11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211

Chain D from PDB  Type:PROTEIN  Length:229
                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhh..eeee..........hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhh..eeee..............hhhhhhhhhh....eeeee.....hhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhh...eee................hhhhhhhhhhhh...eeee....hhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4utw D  -8 GSSHHHHHHMLDVVKGNLIVSCQALSDEPLHSSFIMGRMAIAAKQGGAAAIRAQGVNDINEIKEVTKLPIIGIIKRNYDDSEIYITPTMKEVDELLKTDCEMIALDATKRKRPNGENVKDLVDAIHAKGRLAMADISTLEEGIEAEKLGFDCVSTTLSGYTPYSKQSNSVDFELLEELVKTVKIPVICEGRINTPEELKKALDLGAYSAVVGGAITRPQQITKRFTDIL 220
                                     1        11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4UTW)

(no "CATH Domain" information available for 4UTW)

(no "Pfam Domain" information available for 4UTW)

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4utt	STRUCTURAL CHARACTERISATION OF NANE, MANNAC6P C2 EPIMERASE , FROM CLOSTRIDIUM PERFINGENS
4utu	STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF THE N- ACETYLMANNOSAMINE-6-PHOSPHATE 2-EPIMERASE FROM CLOSTRIDIUM PERFRINGENS

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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Exons (0, 0)

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Gene Ontology (8, 16)

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