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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PYGO2 PHD FINGER IN COMPLEX WITH THE B9L HD1 DOMAIN AND A CHEMICAL FRAGMENT
 
Authors :  T. C. R. Miller, M. Fiedler, T. J. Rutherford, K. Birchall, J. Chugh, M. B
Date :  12 Jun 14  (Deposition) - 05 Nov 14  (Release) - 14 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Transcription, Pygo, Wnt Signalling, Histone H3, Fragment Screening (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. C. R. Miller, T. J. Rutherford, K. Birchall, J. Chugh, M. Fiedler, M. Bienz
Competitive Binding Of A Benzimidazole To The Histone- Binding Pocket Of The Pygo Phd Finger.
Acs Chem. Biol. V. 9 2864 2014
PubMed-ID: 25323450  |  Reference-DOI: 10.1021/CB500585S

(-) Compounds

Molecule 1 - PYGOPUS HOMOLOG 2, B-CELL CLL/LYMPHOMA 9-LIKE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETM11
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: CODONPLUS RIL
    Expression System Vector Type: PLASMID
    Fragment: PHD FINGER, HD1,RESIDUES 327-387,240-268
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PYGO2, B9L, B-CELL LYMPHOMA 9-LIKE PROTEIN, BCL9-LIKE PROTEIN, PROTEIN BCL9-2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
194W1Ligand/Ion6-METHOXY-1,3-BENZOTHIAZOL-2-AMINE
2ZN2Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:330 , CYS A:333 , HIS A:355 , CYS A:358BINDING SITE FOR RESIDUE ZN A1383
2AC2SOFTWARECYS A:346 , CYS A:350 , CYS A:379 , CYS A:382BINDING SITE FOR RESIDUE ZN A1384
3AC3SOFTWAREALA A:332 , PHE A:354 , CYS A:358 , THR A:359 , CYS A:379 , ASP A:380 , TYR A:1236 , THR A:1240 , HIS A:1262BINDING SITE FOR RESIDUE 94W A1385

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UP5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UP5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UP5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UP5)

(-) Exons   (0, 0)

(no "Exon" information available for 4UP5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:85
                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eee.......eeehhhhh.hhhhhhhhhhh..eee......eeehhhhhhhhhhhhhh....hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------- Transcript
                4up5 A  326 GVYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCVYVFTTHLANTAAEAVLQGRADSILAYH 1262
                                   335       345       355       365       375      1237      1247      1257     
                                                                                  382|                           
                                                                                  1235
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UP5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UP5)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (36, 40)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BCL9L_HUMAN | Q86UU0: 2xb1 4up0
        PYGO2_HUMAN | Q9BRQ0: 2xb1 4up0

(-) Related Entries Specified in the PDB File

4up0 TERNARY CRYSTAL STRUCTURE OF THE PYGO2 PHD FINGER IN COMPLEX WITH THE B9L HD1 DOMAIN AND A H3K4ME2 PEPTIDE