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(-) Description

Title :  THERMODYNAMIC HYPERSTABILITY IN PARAMETRICALLY DESIGNED HELICAL BUNDLES
 
Authors :  G. Oberdorfer, P. Huang, X. Y. Pei, C. Xu, T. Gonen, B. Nannenga, D. Dimai J. Rogers, B. F. Luisi, D. Baker
Date :  09 Jun 14  (Deposition) - 05 Nov 14  (Release) - 19 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.69
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  De Novo Protein, Protein Design, Thermodynamic Hyperstability Helical Bundle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Huang, G. Oberdorfer, C. Xu, X. Y. Pei, B. L. Nannenga, J. M. Rogers, F. Dimaio, T. Gonen, B. Luisi, D. Baker
High Thermodynamic Stability Of Parametrically Designed Helical Bundles
Science V. 346 481 2014
PubMed-ID: 25342806  |  Reference-DOI: 10.1126/SCIENCE.1257481

(-) Compounds

Molecule 1 - DESIGNED HELICAL BUNDLE 5H2L
    Chains: A, B, C, D, E
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric/Biological Unit (1, 5)
No.NameCountTypeFull Name
1ACE5Mod. Amino AcidACETYL GROUP

(-) Sites  (0, 0)

(no "Site" information available for 4UOT)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UOT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UOT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UOT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UOT)

(-) Exons   (0, 0)

(no "Exon" information available for 4UOT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:34
                                                                 
               SCOP domains ---------------------------------- SCOP domains
               CATH domains ---------------------------------- CATH domains
               Pfam domains ---------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------- PROSITE
                 Transcript ---------------------------------- Transcript
                  4uot A  0 xTQEYLLKEIMKLLKEQIKLLKEQIKMLKELEKQ 33
                            |        9        19        29    
                            |                                 
                            0-ACE                             


Chain B from PDB  Type:PROTEIN  Length:34
                                                                 
               SCOP domains ---------------------------------- SCOP domains
               CATH domains ---------------------------------- CATH domains
               Pfam domains ---------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------- PROSITE
                 Transcript ---------------------------------- Transcript
                  4uot B  0 xTQEYLLKEIMKLLKEQIKLLKEQIKMLKELEKQ 33
                            |        9        19        29    
                            0-ACE                             


Chain C from PDB  Type:PROTEIN  Length:34
                                                                 
               SCOP domains ---------------------------------- SCOP domains
               CATH domains ---------------------------------- CATH domains
               Pfam domains ---------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------- PROSITE
                 Transcript ---------------------------------- Transcript
                  4uot C  0 xTQEYLLKEIMKLLKEQIKLLKEQIKMLKELEKQ 33
                            |        9        19        29    
                            0-ACE                             


Chain D from PDB  Type:PROTEIN  Length:34
                                                                 
               SCOP domains ---------------------------------- SCOP domains
               CATH domains ---------------------------------- CATH domains
               Pfam domains ---------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------- PROSITE
                 Transcript ---------------------------------- Transcript
                  4uot D  0 xTQEYLLKEIMKLLKEQIKLLKEQIKMLKELEKQ 33
                            |        9        19        29    
                            0-ACE                             


Chain E from PDB  Type:PROTEIN  Length:34
                                                                 
               SCOP domains ---------------------------------- SCOP domains
               CATH domains ---------------------------------- CATH domains
               Pfam domains ---------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------- PROSITE
                 Transcript ---------------------------------- Transcript
                  4uot E  0 xTQEYLLKEIMKLLKEQIKLLKEQIKMLKELEKQ 33
                            |        9        19        29    
                            0-ACE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UOT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UOT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UOT)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

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(-) Related Entries Specified in the PDB File

4uos THERMODYNAMIC HYPERSTABILITY IN PARAMETRICALLY DESIGNED HELICAL BUNDLES