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(-) Description

Title :  CRYSTAL STRUCTURE OF C-TERMINAL TRUNCATED (110-265) AURA VIRUS CAPSID PROTEASE.
 
Authors :  M. Aggarwal, P. Kumar, S. Tomar
Date :  05 Jun 14  (Deposition) - 18 Jun 14  (Release) - 22 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.81
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Aggarwal, S. Dhindwal, P. Kumar, R. J. Kuhn, S. Tomar
Trans-Protease Activity And Structural Insights Into The Active Form Of The Alphavirus Capsid Protease.
J. Virol. V. 88 12242 2014
PubMed-ID: 25100849  |  Reference-DOI: 10.1128/JVI.01692-14

(-) Compounds

Molecule 1 - CAPSID PROTEASE
    Chains: A, B
    EC Number: 3.4.21.90
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA PLYSS
    Expression System Vector: PET28C
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 110-265
    Organism Scientific: AURA VIRUS
    Organism Taxid: 44158
    Synonym: P130, COAT PROTEIN, C, E3/E2, SPIKE GLYCOPROTEIN E3, SPIKE GLYCOPROTEIN E2, SPIKE GLYCOPROTEIN E1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1GOL6Ligand/IonGLYCEROL
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:-1BINDING SITE FOR RESIDUE GOL A1262
2AC2SOFTWAREGLY A:147 , THR A:148 , ILE A:149 , PHE A:159 , GLU A:168 , HOH A:2081BINDING SITE FOR RESIDUE GOL A1263
3AC3SOFTWAREGLY A:213 , GLY A:214 , ASP A:217 , SER A:218 , GLY A:235 , LEU A:245 , HOH A:2227BINDING SITE FOR RESIDUE GOL A1264
4AC4SOFTWAREGLY B:147 , THR B:148 , ILE B:149 , ALA B:155 , PHE B:159 , GLU B:168 , HOH B:2056 , HOH B:2172BINDING SITE FOR RESIDUE GOL B1262
5AC5SOFTWARETYR B:131 , HIS B:196 , GLY B:213 , GLY B:214 , GLY B:216 , ASP B:217 , ARG B:220BINDING SITE FOR RESIDUE GOL B1263
6AC6SOFTWARETRP B:194 , GLY B:214 , ASP B:217 , SER B:218 , GLY B:236 , HOH B:2136BINDING SITE FOR RESIDUE GOL B1264

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UON)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UON)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UON)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UON)

(-) Exons   (0, 0)

(no "Exon" information available for 4UON)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:154
                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeee.....eeeeeeee..eeeee.....ee...hhhhh..eeehhh.eeeee.hhhhh............eeeee..eeeeee..eeeee....hhhhh..eee.....eeeeeeeeee...eeeeeeeee.....eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uon A  -1 HMALKFEADRTFAVKNEDGKIMGYAVAMEGKVIKPLHVKGTIDHPALAKLKFTKSSSYDMEFAKLPTEMKSDAFGYTTEHPEGFYNWHHGAVQFSGGRFTIPTGAGGPGDSGRPILDNSGKVVAIVLGGANEGARTALSVVTWNKKGAAIKTTH 261
                             ||    117       127       137       147       157       167       177       187       197       207       217       227       237       247       257    
                             0|                                                                                                                                                       
                            110                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeee.....eeeeeeee..eeeee.....ee.hhhhhh...eeehhh.eeeee.hhhhhhhh.........eeeee..eeeeee..eeeee....hhhhh..eee.....eeeeeeeeee...eeeeeeeee.....eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uon B 110 ALKFEADRTFAVKNEDGKIMGYAVAMEGKVIKPLHVKGTIDHPALAKLKFTKSSSYDMEFAKLPTEMKSDAFGYTTEHPEGFYNWHHGAVQFSGGRFTIPTGAGGPGDSGRPILDNSGKVVAIVLGGANEGARTALSVVTWNKKGAAIKTTH 261
                                   119       129       139       149       159       169       179       189       199       209       219       229       239       249       259
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0 ; only for superseded entry 4AUS: 1,2)

(no "SCOP Domain" information available for 4UON, only for superseded entry 4AUS replaced by 4UON)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UON)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UON)

(-) Gene Ontology  (21, 21)

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  POLS_AURAV | Q86925
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 Related Entries

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UniProtKB/Swiss-Prot
        POLS_AURAV | Q86925: 4agj 4agk 5g4b

(-) Related Entries Specified in the PDB File

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