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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ETS DOMAIN OF HUMAN ETV5 IN COMPLEX WITH DNA
 
Authors :  J. A. Newman, H. Aitkenhead, C. D. O. Cooper, D. M. Pinkas, L. Shrestha, N. Burgess-Brown, J. Kopec, F. Fitzpatrick, C. Tallant, F. Von Delft C. H. Arrowsmith, C. Bountra, A. Edwards, O. Gileadi
Date :  29 May 14  (Deposition) - 11 Jun 14  (Release) - 10 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (2x)
Keywords :  Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. D. O. Cooper, J. A. Newman, H. Aitkenhead, C. K. Allerston, O. Gileadi
Structures Of The Ets Domains Of Transcription Factors Etv1 Etv4, Etv5 And Fev: Determinants Of Dna Binding And Redox Regulation By Disulfide Bond Formation.
J. Biol. Chem. V. 290 13692 2015
PubMed-ID: 25866208  |  Reference-DOI: 10.1074/JBC.M115.646737

(-) Compounds

Molecule 1 - ETS TRANSLOCATION VARIANT 5
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: ETS DOMAIN, RESIDUES 365-462
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ETS-RELATED PROTEIN ERM
 
Molecule 2 - 5'-D(*AP*CP*CP*GP*GP*AP*AP*GP*TP*GP)-3'
    Chains: B
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES
 
Molecule 3 - 5'-D(*AP*CP*TP*TP*CP*CP*GP*GP*TP*CP)-3'
    Chains: C
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (2x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:440 , HOH A:2061 , HOH A:2062BINDING SITE FOR RESIDUE CA A1462
2AC2SOFTWAREASP A:452 , HOH A:2070 , HOH A:2071 , HOH A:2072 , HOH A:2074 , HOH A:2075 , HOH A:2077BINDING SITE FOR RESIDUE CA A1463

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UNO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UNO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UNO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UNO)

(-) Exons   (0, 0)

(no "Exon" information available for 4UNO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh...ee.....eee..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..eee......eeee..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 4uno A 367 SLQLWQFLVTLLDDPANAHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPDALFSMAFPD 461
                                   376       386       396       406       416       426       436       446       456     


Chain B from PDB  Type:DNA  Length:10
                                          
                 4uno B   1 ACCGGAAGTG  10
                                    10


Chain C from PDB  Type:DNA  Length:10
                                          
                 4uno C   1 ACTTCCGGTC  10
                                    10
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UNO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UNO)

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(no "Pfam Domain" information available for 4UNO)

(-) Gene Ontology  (24, 24)

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  4uno
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  ETV5_HUMAN | P41161
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ETV5_HUMAN | P41161: 5ilv

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