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(-) Description

Title :  STRUCTURE OF GALACTOSE OXIDASE HOMOLOGUE FROM STREPTOMYCES LIVIDANS
 
Authors :  A. K. Chaplin, M. A. Hough, J. A. R. Worrall
Date :  29 May 14  (Deposition) - 10 Jun 15  (Release) - 05 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.77
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Metal Binding Protein, Copper Oxidase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. K. Chaplin, M. L. Petrus, G. Mangiameli, M. A. Hough, D. A. Svistunenko, P. Nicholls, D. Claessen, E. Vijgenboom, J. A. Worrall
Glxa Is A New Structural Member Of The Radical Copper Oxidase Family And Is Required For Glycan Deposition At Hyphal Tips And Morphogenesis Of Streptomyces Lividans.
Biochem. J. V. 469 433 2015
PubMed-ID: 26205496  |  Reference-DOI: 10.1042/BJ20150190

(-) Compounds

Molecule 1 - SECRETED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET28A
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 35-645
    Organism Scientific: STREPTOMYCES LIVIDANS
    Organism Taxid: 1916

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2CU2Ligand/IonCOPPER (II) ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2CU-1Ligand/IonCOPPER (II) ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CU-1Ligand/IonCOPPER (II) ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:121 , TYR A:289 , TYR A:501 , HIS A:502 , HIS A:589 , HOH A:2057BINDING SITE FOR RESIDUE CU A 700
2AC2SOFTWARELYS A:578 , VAL A:579 , ARG A:580 , LEU A:600 , ASP A:601 , HOH A:2416BINDING SITE FOR RESIDUE ACT A 701
3AC3SOFTWAREASP A:456 , ASP A:457 , HIS A:483 , ASP A:485 , HOH A:2417BINDING SITE FOR RESIDUE ACT A 702
4AC4SOFTWAREPHE A:61 , TYR A:65 , ARG A:66 , GLN A:67 , GLN A:535 , ILE A:537BINDING SITE FOR RESIDUE ACT A 703
5AC5SOFTWARECYS B:121 , TYR B:289 , TYR B:501 , HIS B:502 , HIS B:589 , HOH B:2030BINDING SITE FOR RESIDUE CU B 700
6AC6SOFTWAREASP B:456 , HIS B:483 , PRO B:484 , ASP B:485 , LYS B:578BINDING SITE FOR RESIDUE ACT B 701

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UNM)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Pro A:399 -Pro A:400
2Gly A:556 -Pro A:557
3Pro B:399 -Pro B:400
4Gly B:556 -Pro B:557

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UNM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UNM)

(-) Exons   (0, 0)

(no "Exon" information available for 4UNM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:599
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh.hhhhhhhhheeeee..hhhhh....eeee.....eeeeee...hhhhhhhh..eeeee......eeeee........eeee.....eeee................eeeeeeee......eee....eeee.....eeee...eee..........eeeeeeee....hhhhh....eeeee...hhhhhhheeeee...............eeeee....eeeee..........eeee.....eeee..............eeee....eeee............eee.....eee................eee......eee.............eeee..hhhh.eeeee..............eeeee.......eee...........eeee.....eeee....hhhhh.......eeeee....eeee...........eeeee.....eeeee...................eeeeehhhhh...........ee.....eeeee..hhh.eeeeeeee..ee........eeee.eeeee..eeeee..........eeeeeeeee........eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4unm A  38 KYHQYKINQPEYKAANGKWEIIEFPEKYRQNTIHAALLRTGKVLMVAGSGNNQDNSDDKQYDTRIWDPVKGTIKKVPTPSDLFCTGHTQLANGNLLIAGGTKRYEKLKGDVTKAGGLMVVHNENPDKPITLPAGTKFTGKENGKTFVSKDPVLVPRAEKVRNDPGLGRIYVEAQKSGSAYETGTEDNYRVQGLSGADARNTYGIAQKLALDKKDFQGIRDAFEFDPVAEKYIKVDPMHEARWYPTLTTLGDGKILSVSGLDDIGQLVPGKNEVYDPKTKAWTYTDKVRQFPTYPALFLMQNGKIFYSGANAGYGPDDVGRTPGVWDVETNKFTKVPGMSDANMLETANTVLLPPAQDEKYMVIGGGGVGESKLSSEKTRIADLKADDPKFVDGPSLEKGTRYPQASILPDDSVLVSGGSQDYRGRGDSNILQARLYHPDTNEFERVADPLVGRNYHSGSILLPDGRLMFFGSDSLYADKANTKPGKFEQRIEIYTPPYLYRDSRPDLSGGPQTIARGGSGTFTSRAASTVKKVRLIRPSASTHVTDVDQRSIALDFKADGDKLTVTVPSGKNLVQSGWYMMFVTDGEGTPSKAEWVRVP 645
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197|      216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636         
                                                                                                                                                                                         197|                                                                                                                                                                                                                                                                                                                                                                                                                                                      
                                                                                                                                                                                          207                                                                                                                                                                                                                                                                                                                                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:609
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh.hhhhhhhhheeeee..hhhhh....eeee.....eeeeee...hhhhhhh...eeeee......eeeee........eeee.....eeee................eeeeeeee......eee....eeee.....eeee...eee...eeee......eeeee.eeeeeeee.....hhhh....eeeee.....hhhhheeeee...............eeeee....eeee...........eeee.....eeee..............eee......eee............eee.....eee................eee......eee.............eeee..hhhh.eeeee..............eeeee.......eee...........eeee.....eeee....hhhhh.......eeeee....eeeee..........eeeee.....eeeee...................eeeeehhhhh...........ee.....eeeee..hhh.eeeeeeee..eee.......eeee.eeeee..eeeee..........eeeeeeeee........eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4unm B  37 EKYHQYKINQPEYKAANGKWEIIEFPEKYRQNTIHAALLRTGKVLMVAGSGNNQDNSDDKQYDTRIWDPVKGTIKKVPTPSDLFCTGHTQLANGNLLIAGGTKRYEKLKGDVTKAGGLMVVHNENPDKPITLPAGTKFTGKENGKTFVSKDPVLVPRAEKVFDPATGAFVRNDPGLGRIYVEAQKSGSAYETGTEDNYRVQGLSGADARNTYGIAQKLALDKKDFQGIRDAFEFDPVAEKYIKVDPMHEARWYPTLTTLGDGKILSVSGLDDIGQLVPGKNEVYDPKTKAWTYTDKVRQFPTYPALFLMQNGKIFYSGANAGYGPDDVGRTPGVWDVETNKFTKVPGMSDANMLETANTVLLPPAQDEKYMVIGGGGVGESKLSSEKTRIADLKADDPKFVDGPSLEKGTRYPQASILPDDSVLVSGGSQDYRGRGDSNILQARLYHPDTNEFERVADPLVGRNYHSGSILLPDGRLMFFGSDSLYADKANTKPGKFEQRIEIYTPPYLYRDSRPDLSGGPQTIARGGSGTFTSRAASTVKKVRLIRPSASTHVTDVDQRSIALDFKADGDKLTVTVPSGKNLVQSGWYMMFVTDGEGTPSKAEWVRVP 645
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UNM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UNM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UNM)

(-) Gene Ontology  (3, 3)

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