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(-) Description

Title :  CRYSTAL STRUCTURE OF THE TPR DOMAIN OF SMG6
 
Authors :  S. Chakrabarti, F. Bonneau, S. Schuessler, E. Eppinger, E. Conti
Date :  14 May 14  (Deposition) - 23 Jul 14  (Release) - 27 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Telomerase-Binding Protein, Nonsense Mediated Mrna Decay (Nmd), Tpr Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Chakrabarti, F. Bonneau, S. Schussler, E. Eppinger, E. Conti
Phospho-Dependent And Phospho-Independent Interactions Of The Helicase Upf1 With The Nmd Factors Smg5-Smg7 And Smg6.
Nucleic Acids Res. V. 42 9447 2014
PubMed-ID: 25013172  |  Reference-DOI: 10.1093/NAR/GKU578

(-) Compounds

Molecule 1 - TELOMERASE-BINDING PROTEIN EST1A
    Chains: A
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: PLYSS
    Expression System Vector: PET
    Expression System Vector Type: PLASMID
    Fragment: TETRATRICOPEPTIDE REPEAT, RESIDUES 580-1166
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SMG6, EST1-LIKE PROTEIN A, EVER SHORTER TELOMERES 1A, SMG-6 HOMOLOG, TELOMERASE SUBUNIT EST1A, HSMG5/7A

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:973 , LEU A:1047 , VAL A:1055BINDING SITE FOR RESIDUE GOL A1200

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UM2)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser A:930 -Pro A:931
2Asn A:1041 -Pro A:1042

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UM2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UM2)

(-) Exons   (0, 0)

(no "Exon" information available for 4UM2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:510
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.........hhhhh......hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh....................hhhh..hhhhhhhhhhhhh.....................hhhhhhhhhhhh.................eee.......................eee....hhhhhhhhhhhhhhhhhhhhh......eeee..eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4um2 A -581 SMELHRLLRVADNQELQLSNLLSRDRISPEGLEKMAQLRAELLQLYERCILLDIEFSDNQNVDQILWKNAFYQVIEKFRQLVKDPNVENPEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMDGLAIRLRKTVKYALISAQRCMICQGDIARYREQASDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKGLGSLSPSDLNKRFILSFLHAHGKLFTRIGMETFPAVAEKVLKEFQVLLQHSPSPIGSTRMLQLMTINMFAVHNSQRSVIQEQAAALGLAMFSLLVRRCTCLLKESLSSPEDQDDQDDIKVSSFVPDLKELLPSVKVWSDWMLGYPDTWNPPPTSLDLPSHVAVDVWSTLADFCNILTAVNQSEVPLYKDPDDDLTLLILEEDRLLSGFVPLLAAPQDPCYVEKTSDKVIAADCKRVTVLKYFLEALCGQEEPLLAFKGGKYVSVAPV 1159
                             ||    587       597       607       617       627       637       647       657       667       677       687       697       707  ||   720       730       740       750       760       770       780       790       800       810       820 ||    886       896       906       916       926       936       946       965       975       985       999      1009      1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129      1139      1149      1159
                             ||                                                                                                                               710|                                                                                                         822|                                                                        954|                          993|                                                                                                                                                                 
                          -580|                                                                                                                                714                                                                                                          879                                                                         964                           998                                                                                                                                                                 
                            580
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UM2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UM2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UM2)

(-) Gene Ontology  (28, 28)

Asymmetric/Biological Unit(hide GO term definitions)

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  4um2
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  EST1A_HUMAN | Q86US8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        EST1A_HUMAN | Q86US8: 2dok 2hww 2hwx

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4UM2)